Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57330 1451 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 1450 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT4G37640 1211 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 1208 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT1G27770 1207 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT4G29900 860 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 852 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 843 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 758 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 715 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043100 [exp] 1768 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.001G020600 [exp] 1462 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 1394 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.014G016600 [exp] 1214 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.007G055500 [exp] 1197 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.006G072900 [exp] 862 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 842 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 840 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.005G052700 [exp] 775 / 0 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035439 [exp] 1554 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 1543 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10031053 [exp] 1484 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10016366 [exp] 1378 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 1187 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10011522 [exp] 1181 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10025199 [exp] 1115 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10019300 [exp] 1106 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10007736 [exp] 1098 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10019758 [exp] 924 / 0 AT2G41560 1007 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G046500.1 pacid=42770083 polypeptide=Potri.006G046500.1.p locus=Potri.006G046500 ID=Potri.006G046500.1.v4.1 annot-version=v4.1 ATGGACAAGTTATTGAAGGATTTTGAAGTGGAGCCCAAGAATACATCGGAAGATGCGCTAAGGAAATGGAGACGAGCTGTTACTATTGTCAAAAATCCTC GCCGGCGTTTCCGTATGGTCGCCGATCTGGCTAAGCGAGCCGCAGCCGAACGCAAAATACGCAGCATCCAGGAAAAGATACGAATTGCTCTTTATGTCAA AAGAGCAGCTCTGCAGTTCCTTGATGCTGGAGCTGCAGCTGGAAATGCTTCTGGTCAATCTGAATACAAGATTTCAGATGAGGTTAAAGAAGCAGGTTTT GACATTGATCCAGACGAACTTGCATCCATTGTTCGTGAGCATGGTATGAAGGGTTTGAAAAAAAATGGTGGAGTTGATGGGATTGCAGAGAAAGTCTCTG TCTCATTCGAAGAAGGTGTTCGCACTAGTGATGTATCTACCAGACAAAAGATTTATGGCTGCAACCGTTACACAGAGAAACCTCCTCGAAGCTTTTTAAT GTTTGTGTGGGAAGCAATGCAAGACTTGACATTGATTATCCTTATGATATGTGCTTTGGTTTCTATAGGTGTAGGAATTGCTACTGAAGGGTGGCCAAAG GGCATGTATGATGGATTGGGAATCATACTTAGTGTATTCTTGGTAGTCATGGTTACTGCTGCAAGTGATTACAACCAATCCTTACAATTTAGGGACCTGG ATAGGGAAAAGAAAAAGATTTCTATTCAGGTGACAAGAGATGGACGAAAACAAGAGATCTCCATTTATGACTTGGTTGTTGGAGATGTGGTCCAATTATC TATTGGAGACATAGTTCCAGCTGATGGGATTTACATATCAGGATACAGCTTGGTGATTGATGAGTCAAGCTTATCAGGGGAGAGTGAACCAGTGAATGTA TATGAAAATAAACCTTTACTTCTTTCAGGAACTAAAGTGCAGGATGGGTCAGGAAAGATGATAGTGACTGCAGTTGGTATGAGGACTGAATGGGGAAAGC TGATGGAAACTCTTAGTGAGGGTGGAGAAGATGAGACCCCACTTCAGGTGAAGTTGAATGGGGTTGCTACTGTTATTGGAAAGATCGGTTTGGCTTTTGC TGTGCTTACATTTTTGGTGTTAACTGTGAGGTTTCTGGTGGAAAAGGCGCTTCGTCATGAGTTCACAGATTGGTCTTCAAGTGATGCGATGACACTTCTT AACTACTTTGCTATTGCAGTAACAATAATCGTAGTTGCTGTCCCTGAAGGATTACCATTGGCAGTGACTTTGAGTCTTGCCTTTGCAATGAAGAAACTAA TGAATGAGAAGGCACTTGTCAGGCATCTCTCTGCTTGTGAGACAATGGGTTCTGCTACTTGCATTTGCACAGATAAGACAGGGACGTTAACCACAAATTG TATGGTAGTTGATAAGATATGGATACGTGGAAAAACTGAAGTTATTAAAAGCAGACACAGTGAAGGCATTTTAGAGATGGGAATATCTGAAGGTGTATTA AACCTCCTGTTTCAGGTTATATTTCAAAATACTGCTTGTGAAACAAGTAAAGATGAAAATGGAAAGAACAAGATTTTAGGAACACCGACAGAGAAAGCTC TGTTTGAATTTGGCTTGCTTTTGGGCGGTGACTTTGATGCACAACGCAAAGATTTTCAGATAATGAAGGTTGAGCCTTTCAATTCTGTGAGGAAGAAGAT GTCTGTGCTAGTGGCACTTCCTAGTGGGGAGCTACGAGCTTTCTGCAAAGGTGCGTCAGAAATCGTATTAAAAATGTGTGACAAGTTTCTTGATGACAGT GGAAAATCAGTTCCTCTTTTTGAAGAACAGATATTGAGCATATCAGATGTTATAAATGGCTTTGCCTCTGAAGCTCTGAGAACTCTATGCTTGGCTTTTA AAGATCTAGATGACCCTGCTTATGAAGGCAGCATCCCTGATTTTGGCTACACGTTGGTAACAGTTGTTGGAATCAAGGATCCAGTGCGTCCTGGTGTCAA GGATGCTGTTCAGACTTGTCTTGCAGCTGGCATAACTGTTCGTATGGTAACCGGTGATAATATAAATACAGCCAAAGCTATAGCCAAGGAATGTGGAATA CTTACTGAGGGTGGATTGGCCATAGAAGGACCAGAGTTTCGTATCATGAATCCTCAGCAGATGAGGGAAAACATTCCCAAAATTCAGGTAATGGCTCGGT CTTTGCCTTTGGATAAGCACACCTTGGTAACCAATTTGAGGAATATGTTCAAAGAGGTGGTAGCAGTAACTGGTGATGGGACCAATGATGCTCCCGCATT GCATGAGGCTGACATTGGACTTTCTATGGGCATAGCAGGAACAGAGGTTGCAAAAGAAAGTGCTGATGTCATCATAATGGATGACAATTTTAGGACCATT TTAAATGTTGCTAAATGGGGTCGTGCAGTCTACATAAACATTCAAAAGTTTGTGCAATTCCAGCTAACAGTTAACGTTGTTGCTCTTGTAATTAATTTTG CCTCTGCATGCATCACAGGATCTGCTCCCCTGACTGCTGTGCAGTTGCTTTGGGTTAACATGATTATGGACACACTTGGGGCATTGGCGCTTGCTACAGA ACCTCCAAATGATGGGCTGATGAAAAGGGCACCTGTAGGGAGGGGTGCAAGCTTCATTACAAAGACCATGTGGAGGAATATATTTGGTCAGAGTATCTAT CAGCTGGTCATCCTTGCAGTTCTCCAATTTGATGGGAAGCGTCTTTTAGGACTTAGTGGCACAGATGCTACCACTATGCTCAATACTGTGATATTCAACA CTTTCGTGTTTTGCCAGGTGTTTAATGAAATAAACAGTCGTGATATAGAGAAGATTAACGTCTTCCGGGGCATGTTCAGCAGCTGGATATTCACAGGTGT TATGGTTATAACAGTCGTATTCCAAGTAATCATAGTCGAGTTCCTGGGAACTCTTGCAAGCACAGTGCCCTTGAGCTGGCAAATGTGGCTATTCTGCGTT TTAATTGGAGCTGTTAGCATGCCCGTTGCCGTTGTCCTAAAGTGCATTCCTGTTGAAAGAGGGAATCCTAAGCAGCATGATGGTTATGATGCTCTCCCCC CTGGTCCAGACCAAGCTTAA
AA sequence Show only first row Show all	>Potri.006G046500.1 pacid=42770083 polypeptide=Potri.006G046500.1.p locus=Potri.006G046500 ID=Potri.006G046500.1.v4.1 annot-version=v4.1 MDKLLKDFEVEPKNTSEDALRKWRRAVTIVKNPRRRFRMVADLAKRAAAERKIRSIQEKIRIALYVKRAALQFLDAGAAAGNASGQSEYKISDEVKEAGF DIDPDELASIVREHGMKGLKKNGGVDGIAEKVSVSFEEGVRTSDVSTRQKIYGCNRYTEKPPRSFLMFVWEAMQDLTLIILMICALVSIGVGIATEGWPK GMYDGLGIILSVFLVVMVTAASDYNQSLQFRDLDREKKKISIQVTRDGRKQEISIYDLVVGDVVQLSIGDIVPADGIYISGYSLVIDESSLSGESEPVNV YENKPLLLSGTKVQDGSGKMIVTAVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLAFAVLTFLVLTVRFLVEKALRHEFTDWSSSDAMTLL NYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNEKALVRHLSACETMGSATCICTDKTGTLTTNCMVVDKIWIRGKTEVIKSRHSEGILEMGISEGVL NLLFQVIFQNTACETSKDENGKNKILGTPTEKALFEFGLLLGGDFDAQRKDFQIMKVEPFNSVRKKMSVLVALPSGELRAFCKGASEIVLKMCDKFLDDS GKSVPLFEEQILSISDVINGFASEALRTLCLAFKDLDDPAYEGSIPDFGYTLVTVVGIKDPVRPGVKDAVQTCLAAGITVRMVTGDNINTAKAIAKECGI LTEGGLAIEGPEFRIMNPQQMRENIPKIQVMARSLPLDKHTLVTNLRNMFKEVVAVTGDGTNDAPALHEADIGLSMGIAGTEVAKESADVIIMDDNFRTI LNVAKWGRAVYINIQKFVQFQLTVNVVALVINFASACITGSAPLTAVQLLWVNMIMDTLGALALATEPPNDGLMKRAPVGRGASFITKTMWRNIFGQSIY QLVILAVLQFDGKRLLGLSGTDATTMLNTVIFNTFVFCQVFNEINSRDIEKINVFRGMFSSWIFTGVMVITVVFQVIIVEFLGTLASTVPLSWQMWLFCV LIGAVSMPVAVVLKCIPVERGNPKQHDGYDALPPGPDQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Potri.006G046500 [exp]	0	1
AT3G45240		ATSNAK2, GRIK1	geminivirus rep interacting ki...		Potri.001G010700 [exp]	2.44	0.8779
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385900 [exp]	4.58	0.8764
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	6.00	0.8542
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G229000 [exp]	6.48	0.8621
AT5G10290			leucine-rich repeat transmembr...		Potri.005G074200 [exp]	8.48	0.8613
AT1G71695			Peroxidase superfamily protein...		Potri.005G195700 [exp]	11.83	0.8318
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	13.85	0.8719	Pt-ATCNGC19.3
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	15.16	0.8708	Pt-RGA.54
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	15.49	0.8302
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	17.66	0.8497

Compare expression of checked genes

Potri.006G046500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.