Plant FIBer expression Database

Potri.006G046800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57320 84 / 3e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G046800.2 pacid=42770141 polypeptide=Potri.006G046800.2.p locus=Potri.006G046800 ID=Potri.006G046800.2.v4.1 annot-version=v4.1
ATGGCAGCTTCTGAGACAAAAACCAACCTTGAAGGTGTCCTTAAACCCTTCTATCAAAGAGCTTCTGAAGCTGAGGATCGGCTGTCAAGACTGGAAGCTT
CCGTTGCAAGTAATAGAGATGCTGGAAGCGAGGAACATTTGAAAACTATAAGTGAACTTCAGGCAAAGCTAGAAGGTGCAAATGCAGAGCTAGCTTCGGA
ACGAGAAAAGGCTAAGAAGCTTGCTGTGGAAAATGGAAAGCTCCAGTATCGTGTTATTCATCTTGTCCAAGCAATCAGGGAGGGTGATGCTAAGTTGGAG
AGCCTAAAAGGTGGTTCAGAAGCAAGTGCAGAGGCTATCCCGAAATTGGAGAATTTACGATTATGA
AA sequence
>Potri.006G046800.2 pacid=42770141 polypeptide=Potri.006G046800.2.p locus=Potri.006G046800 ID=Potri.006G046800.2.v4.1 annot-version=v4.1
MAASETKTNLEGVLKPFYQRASEAEDRLSRLEASVASNRDAGSEEHLKTISELQAKLEGANAELASEREKAKKLAVENGKLQYRVIHLVQAIREGDAKLE
SLKGGSEASAEAIPKLENLRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57320 unknown protein Potri.006G046800
[exp]
0 1
AT1G73320 S-adenosyl-L-methionine-depend... Potri.017G153900
[exp]
5.56 0.8036
AT1G73350 unknown protein Potri.004G066700
[exp]
8.48 0.7708
AT5G62575 SDH7B, SDH7 succinate dehydrogenase 7B, su... Potri.012G077101
[exp]
9.48 0.7868
AT1G75440 UBC16 ubiquitin-conjugating enzyme 1... Potri.007G018700
[exp]
11.31 0.7315 UBC17.1
AT3G46630 Protein of unknown function (D... Potri.014G023200
[exp]
17.23 0.7693
AT3G15395 unknown protein Potri.001G402000
[exp]
18.24 0.7829
AT3G50950 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.... Potri.019G125400
[exp]
22.75 0.7623
AT1G61780 postsynaptic protein-related (... Potri.004G021200
[exp]
23.00 0.7406
AT5G18250 unknown protein Potri.001G023000
[exp]
23.91 0.7364
AT1G26880 Ribosomal protein L34e superfa... Potri.015G106532
[exp]
26.83 0.7818

Potri.006G046800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.