Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41530 442 / 3e-158 ATSFGH ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031051 [exp] 462 / 3e-166 AT2G41530 473 / 9e-171 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10042038 [exp] 461 / 6e-166 AT2G41530 478 / 2e-172 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10035437 [exp] 421 / 3e-150 AT2G41530 433 / 6e-155 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10018041 [exp] 79 / 1e-16 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00326 [poplar] [flax] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Potri.006G047000.2 pacid=42769274 polypeptide=Potri.006G047000.2.p locus=Potri.006G047000 ID=Potri.006G047000.2.v4.1 annot-version=v4.1 ATGGAAACAAAGCCAAGTGAGATCAGTAGCTCAAAGATGTTTGGTGGATACAACAAGAGATACAAGCATTTCAGCCCTACACTGGGTTGCTCCATGACTT TCTACATCTATTTCCCTCCATCCCCTTCCCCTTCCCACAAATTCCCAGTGCTGTATTGGCTCTCTGGTCTTAGCTGCACCGATGAGAACTTTATAGCTAA ATCAGGAGCTCAACGTGTTGCTTCGACAGAGGGCATTGTCCTGATCGCTCCTGATACATCTCCAAGAGGCCTGAATGTGGAAGGAGAGGCAGACAGCTGG GATTTTGGTGTAGGTGCTGGATTCTATCTTAATGCTACTCAAGAGAAATGGAAGAACTGGCGGATGTATGACTATGTTGTCAAGGAACTGCCAAAACTTC TTAGTGAAAATTTTCCGCAGCTGGAGACATCAAAGGCATCTATATTTGGTCATTCAATGGGCGGCCATGGTGCTTTAACAATCTACCTGAAGAACCTCGA CAAGTACAAGTCGGTATCTGCCTTCTCACCAGTTGCCAACCCAATTAATTGTCCATGGGGCCAGAAGGCTTTCACAAATTATCTTGGACCCAGTAAAGCT GATTGGGAGGAATATGATGCCACTTCTCTGGTGTCAAAGGTCCATGATGTATCTGCTACCATTTTAATTGATCAGGGAGATGAGGATAAATTCTTGCATG ATCAGCTGCTGCCAAACAAGTTTGAAGAGGCGTGCAGGAGTGCAAATGTTTCAGTTCTGATGCGATTGCAACCTGGTTATGATCACTCCTACTTTTTCAT TGCCACTTTCATCGATGACCACATTCACCACCATGCTCATGCTCTTAAACTTTAA
AA sequence Show only first row Show all	>Potri.006G047000.2 pacid=42769274 polypeptide=Potri.006G047000.2.p locus=Potri.006G047000 ID=Potri.006G047000.2.v4.1 annot-version=v4.1 METKPSEISSSKMFGGYNKRYKHFSPTLGCSMTFYIYFPPSPSPSHKFPVLYWLSGLSCTDENFIAKSGAQRVASTEGIVLIAPDTSPRGLNVEGEADSW DFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSKASIFGHSMGGHGALTIYLKNLDKYKSVSAFSPVANPINCPWGQKAFTNYLGPSKA DWEEYDATSLVSKVHDVSATILIDQGDEDKFLHDQLLPNKFEEACRSANVSVLMRLQPGYDHSYFFIATFIDDHIHHHAHALKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Potri.006G047000 [exp]	0	1
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Potri.019G024000 [exp]	5.19	0.8883	PtrcPrxIIF,Pt-PRX.1
AT4G01900		PII, P11, GLB1	GLNB1 homolog (.1)		Potri.002G191300 [exp]	16.70	0.7921	Pt-GLB1.1
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	21.40	0.8769
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002300 [exp]	22.80	0.8353
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.018G084800 [exp]	24.65	0.8228
AT2G35450			catalytics;hydrolases (.1)		Potri.003G167600 [exp]	27.05	0.8757
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Potri.018G123700 [exp]	29.39	0.8397
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Potri.001G420900 [exp]	37.48	0.8744
AT1G53520			Chalcone-flavanone isomerase f...		Potri.011G101800 [exp]	39.23	0.8628
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.005G215900 [exp]	54.26	0.8177

Compare expression of checked genes

Potri.006G047000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.