Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57300 2133 / 0 ATINO80 INO80 ortholog (.1.2) AT3G12810 320 / 1e-88 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G06400 270 / 3e-74 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 269 / 5e-74 CHR17 chromatin remodeling factor17 (.1.2) AT5G66750 263 / 6e-74 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT3G06010 258 / 3e-70 ATCHR12 Homeotic gene regulator (.1) AT5G19310 246 / 2e-66 Homeotic gene regulator (.1) AT2G28290 243 / 2e-64 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G46020 228 / 6e-60 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT2G13370 227 / 1e-59 CHR5 chromatin remodeling 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043500 [exp] 2790 / 0 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.003G022100 [exp] 316 / 3e-87 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.001G207700 [exp] 316 / 3e-87 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.019G129900 [exp] 274 / 1e-77 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 266 / 1e-74 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G205600 [exp] 268 / 1e-73 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 265 / 1e-72 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 262 / 2e-71 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 259 / 1e-70 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031050 [exp] 2267 / 0 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10035436 [exp] 2033 / 0 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2) Lus10002974 [exp] 295 / 9e-81 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10041735 [exp] 266 / 2e-74 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10033967 [exp] 263 / 6e-71 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 248 / 5e-67 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 248 / 6e-67 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10024019 [exp] 240 / 1e-65 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10012798 [exp] 238 / 7e-63 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10009711 [exp] 230 / 1e-60 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] P-loop_NTPase PF13892 [poplar] [flax] DBINO DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G047100.4 pacid=42767275 polypeptide=Potri.006G047100.4.p locus=Potri.006G047100 ID=Potri.006G047100.4.v4.1 annot-version=v4.1 ATGGACAACAGGAGACAAGCCAAGGACTCGCTTTCTTACTCCAATTTATTCAATCTTGAGTCTTTGGTGAACTTCAGAGTTCCACAACCTGATGATGAAT TTGATTATTATGGGAGTAGTAGTCAGGATGAGAGCAGAGGTAGCCAAGGTGGAGCAATGGCGAATTTTGTTAATAGGAATCTATCAGAGAGGGAATTGAA TTCTGTGAAGAGAAAGAGGCGGTATAACAACAGCGAGGGAGAGGAGGAAGATAGACATTTCAGGGCACGCATTACAGAGGATAAGTATCGCTCAATGTTG GGAGAACATATTCAGAAGTACAAGAGGAGGTATAAGGATCCCTTGCCAAGTCCTGCTCCTCCTCCTCCTCCTCCCCCTCCTCCCCGTATGGGGATTCCCA TTCCAAAGAGTAGTTTGGGTGGTTCAAAAACTAGGAAGCTCGGGAGTGAGCAGCGAGGAGGGTTACATGACATGGAAACCACATCTGAATGGGCCAATGA CATTACTCCATCAAAACGCAGAGACTACCATGAACCGGAGTTTACACCCAAAATATACTATGAACCTCCTTATTTGGATATTGGGGATGGTGTCACTTAT AGGATACCCCCCTCTTATGATAAGCTTGCAGCATCATTGAACTTGCCAAGCTTCTCAGATATGCGGGTGGAGGAATTTTACTTGAAGGGCACCTTAGATT TGGGTTCCTTGGCAGCAATGATAGCCAATGATAAAAGGTTTGGGCCTAGAAGCCAAGCAGGGATGGGAGAGCCCCAATCACAATATGAATCACTTCAGGC AAGATTGAAGGCATTGACAGCTTCTAGCTCAGCTGAGAAATTCAGTCTCAAGATATCTGAAGAGGCATTGAATTCCACAATCCCAGAAGGGGCAGCTGGA AATATAAGACGCTCTATTTTGTCAGAGGGTGGTGTAATGCAGGTTTACTATGTTAAGGTTTTGGAGAAAGGAGACACATATGAGATCATTGAGCGGGGTC TACCTAAGAAGCCAAAGATAATTAAAGACCCTTCCATCATTGAGAGGGAGGAAATGGAGAAGATTGGCAAGGTTTGGGTAAACATTGTCAGAAGAGACAT ACCTAAGCACCATAGGATTTTCACTACGTTGCATCGAAAGCAACTAATTGATGCCAAGAGGTTCTCAGAAAATTGTCAAAGAGAGGTCAAAATGAAGGTT AGTAGATCACTAAAAATAATGAAGGGTGCTGCGATTCGCACTAGGAAGTTAGCTAGAGATATGCTGCTGTTTTGGAAGCGAGTGGATAAGGAGATGGCAG AGGTGAGGAAAAAGGAGGAAAGAGAAGCAGCAGAAGCTTTGAAGCGTGAACAAGAGCTCCGGGAAGCAAAAAGACAGCAGCAAAGGCTCAATTTTCTCAT ACAACAAACAGAACTCTACAGTCATTTCATGTCAAACAAACCAAGTTCACAGCACTCAGAAGCTTTGCCAATTGGAGATGAAATGACAGATGATCAAGGA ATGGATTTGAGCACTGCTGAAGCAGGGCTTGATGATCAGGAAGAAGATCCCGAGGACGCTGAATTGAGAAAAGAGGCTCTCAAAGCTGCTCAAGATGCAG TCTCAAAGCAGAAATTGTTAACAAGTGCTTTTGATATCGAGTGTTCAAAGCTGCGTGAAGCTGCTGATATTGAGGGACCTATAAATGATGCCTCAGTTGC AGGATCTAGCAACATTGATTTGCAGACACCCTCCACCATGCCTGTTACATCAACAGTTCAGGCACCAGAGTTGTTTAGAGGTAGCCTCAAAGAATATCAG TTGAAGGGTCTTCAGTGGCTGGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGCCTTGGAAAGACTATTCAAGCCATGGCAT TCTTGGCTCATTTAGCTGAGGAAAAAAATATTTGGGGTCCTTTTCTGATTGTTGCTCCAGCTTCTGTCTTGAATAACTGGGCTGATGAAATCAGTCGCTT CTGCCCTGACTTGAAAACCCTTCCATATTGGGGTGGGCTTCAAGAGCGGATGGTACTTAGGAAAAACATTAATCCAAAGCGCCTTTACCGAAGGGATGCT GGTTTTCACATTCTCATTACCAGCTATCAATTGCTAGTGTCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAATACATGGTATTAGATGAAGCCCAGG CTATTAAAAGTGCTAACAGCATAAGATGGAAGACATTGCTCAGTTTTAATTGTCGTAATCGCTTGCTGCTGACTGGTACACCGATTCAGAATAACATGGC AGAATTGTGGGCCCTTCTGCATTTCATCATGCCGACATTGTTTGACAGCCATGAACAGTTCAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAA CACGGGGGTACATTAAATGAACACCAGCTAAACAGATTGCATGCAATTCTTAAGCCTTTTATGCTGCGTCGAGTGAAGAAAGACGTGATTTCCGAGTTAA CAAGGAAAACAGAAGTTATGGTGCACTGCAAGTTGAGCTCTCGACAACAAGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGA TGGCAGCCGTGGACATTTCAATGAGAAGAAAATTATGAATCTAATGAACATAGTCATTCAGCTGAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGG AATGAGGGAAGCACATATTTCTATTTTGGAGAGATTCCCAATTCTTTTCTTCCCCCTCCTTTTGGGGAGTTGGAGGACATACATTATTCAGGAGGTCGAA ATCCTATCACATACAAGGTGCCAAAAGTAGTCCACAATGAGATTGTCCAAAGTTCCGAGGTTCTTTGCTCAGCGATTGGACGTGGTGTTGGCAGAGAGTC ATTTCAAAAGCACTTTAACATATTCTCTCCAGAAAATGTGTATCGGTCTGTATATGCACAGGACAATATCTCAGATAGATTGCTTATTAAGAGTGGGACG TTTGGTTTTACCCATTTGATGGATTTGTCCCCAGCAGAGGTTGCATTTCTGGCAACTAGTTCATTTATGGAGAGGCTGTTGTTTTCTATTATGAGACAGG GCCAACAATTTTTGGATGGAACCATAGACTTGCTCATGGAAGACATGGAAGATGACAATGGCAATCACCTTGAGAAATGTAAAGTACGAGCTGTCACACG AATGTTATTGATGCCATCAAGATCTGAGACAGATATCCTGAAAAGGAAAATTGCAACAGGCCTTGCTGATAATCCGTTTAAGGCTCTAGTTAACTCTCAT CAGGACAGGCTTCTGTCCAGCATTAAGCTCCTTAACTCAACTTACACGTCCATCCCACGGACCAGAGCTCCACCGATTGATGGCCAATGCTCAGACAGAA ACTTTGCCTACCAAATGATGGAAGAATTGCACCAACCCAGGGTCAAGAGGTTGTTAATTGGGTTTGCACGCACATCTGAATTTAATGGACCCAGAAAGCC AGAGGGTCCTCATCCTTTAGTTCAGGAGATTGAATCTGAACTACCTGTTTCACAACCTGCTCTTCAGTTGACATACAAGATTTTCGGTTCTTGCCCCCCC ATGCAAAGCTTTGACCCTGCAAAGCTTCTCACGGATTCTGGAAAGCTTCAAACACTTGATATTTTACTGAAACGATTGCGAGCTGAAAACCACCGGGTTC TATTGTTTGCACAAATGACGAAAATGCTAAATATTCTTGAGGACTACATGAATTATAGGAAATATAGATATCTTAGACTTGATGGGTCCTCCACCATCAT GGATCGTCGGGATATGGTCAGAGACTTCCAGCTTAGGAATGATATTTTTGTATTCTTGCTGAGTACCAGAGCTGGTGGGCTTGGTATCAATTTGACAGCT GCCGATACTGTTATTTTTTATGAAAGTGATTGGAATCCTACACTAGATTTACAGGCAATGGATAGAGCACATCGGCTGGGCCAGACAAAGGATGTTACTG TCTACCGGCTCATTTGTAAAGAGACGGTTGAGGAAAAGATTTTGCAAAGAGCAAGCCAGAAACATACTGTGCAACAGCTTGTTATGACAGGTGGTCATGT TCAGGATGATCTCTTGGCTCCTGAGGATGTGGTGTCCTTGCTTCTGGATGATGCCCAGTTGGAGCAGAAGTTGAGAGAAATACCACTGCAGGCCAAGGAT AGACAAAAGAAAAAACCAACAAAGGCCATACGGGTAGATGCAGAAGGTGATGCAACTTTGGAAGATTTGACTGAAACTGTCACTCAGGGTACTGGGAATG AACCATCTGAGGACACAGAGAAATTGAAATCCAATAACAAAAAGAGGAAAGCTGCTTCTGACAAGCAGATTACACCAAAGCCTAGGAATTCACAGAAGAA TGAACTGAATTCTACATCAATGGACTATGAATTGGACGATCCTTTTCTAAATGATGAGCCACAGTCACAGCGACCCAAGAGGTTGAAGAGGCCCAAGAAA AGTGTAAATGAGAAACTCGAACCAGCATTTACTGCCACACCCCAAGTTGATTCATCGCAGATGCAATATCCACATGCAAATAATCTTCCTTCTACATACT CAAACACATGA
AA sequence Show only first row Show all	>Potri.006G047100.4 pacid=42767275 polypeptide=Potri.006G047100.4.p locus=Potri.006G047100 ID=Potri.006G047100.4.v4.1 annot-version=v4.1 MDNRRQAKDSLSYSNLFNLESLVNFRVPQPDDEFDYYGSSSQDESRGSQGGAMANFVNRNLSERELNSVKRKRRYNNSEGEEEDRHFRARITEDKYRSML GEHIQKYKRRYKDPLPSPAPPPPPPPPPRMGIPIPKSSLGGSKTRKLGSEQRGGLHDMETTSEWANDITPSKRRDYHEPEFTPKIYYEPPYLDIGDGVTY RIPPSYDKLAASLNLPSFSDMRVEEFYLKGTLDLGSLAAMIANDKRFGPRSQAGMGEPQSQYESLQARLKALTASSSAEKFSLKISEEALNSTIPEGAAG NIRRSILSEGGVMQVYYVKVLEKGDTYEIIERGLPKKPKIIKDPSIIEREEMEKIGKVWVNIVRRDIPKHHRIFTTLHRKQLIDAKRFSENCQREVKMKV SRSLKIMKGAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMSNKPSSQHSEALPIGDEMTDDQG MDLSTAEAGLDDQEEDPEDAELRKEALKAAQDAVSKQKLLTSAFDIECSKLREAADIEGPINDASVAGSSNIDLQTPSTMPVTSTVQAPELFRGSLKEYQ LKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDA GFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAE HGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTRKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDGSRGHFNEKKIMNLMNIVIQLRKVCNHPELFER NEGSTYFYFGEIPNSFLPPPFGELEDIHYSGGRNPITYKVPKVVHNEIVQSSEVLCSAIGRGVGRESFQKHFNIFSPENVYRSVYAQDNISDRLLIKSGT FGFTHLMDLSPAEVAFLATSSFMERLLFSIMRQGQQFLDGTIDLLMEDMEDDNGNHLEKCKVRAVTRMLLMPSRSETDILKRKIATGLADNPFKALVNSH QDRLLSSIKLLNSTYTSIPRTRAPPIDGQCSDRNFAYQMMEELHQPRVKRLLIGFARTSEFNGPRKPEGPHPLVQEIESELPVSQPALQLTYKIFGSCPP MQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRNDIFVFLLSTRAGGLGINLTA ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKHTVQQLVMTGGHVQDDLLAPEDVVSLLLDDAQLEQKLREIPLQAKD RQKKKPTKAIRVDAEGDATLEDLTETVTQGTGNEPSEDTEKLKSNNKKRKAASDKQITPKPRNSQKNELNSTSMDYELDDPFLNDEPQSQRPKRLKRPKK SVNEKLEPAFTATPQVDSSQMQYPHANNLPSTYSNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	0	1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.001G359700 [exp]	2.23	0.9087	TOP1.1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	2.64	0.9201
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	3.00	0.9155
AT5G06350			ARM repeat superfamily protein...		Potri.001G208900 [exp]	3.46	0.8812
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	3.74	0.9174	HAC901,Pt-HAC1.4
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	4.47	0.9139
AT1G27595			unknown protein		Potri.002G107400 [exp]	8.12	0.8818
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	8.94	0.8896
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	9.00	0.8893
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	9.38	0.8684

Compare expression of checked genes

Potri.006G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.