Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT5G04170 328 / 3e-112 Calcium-binding EF-hand family protein (.1) AT2G27480 149 / 4e-44 Calcium-binding EF-hand family protein (.1) AT3G22930 44 / 3e-05 CML11 calmodulin-like 11 (.1) AT1G74740 44 / 7e-05 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT5G21274 40 / 0.0004 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 40 / 0.0007 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 40 / 0.0007 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 40 / 0.0007 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G50360 40 / 0.0008 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043600 [exp] 390 / 1e-137 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.004G202200 [exp] 193 / 6e-61 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.009G163600 [exp] 193 / 7e-61 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.004G204700 [exp] 53 / 2e-08 AT5G12180 61 / 2e-11 calcium-dependent protein kinase 17 (.1) Potri.016G117200 [exp] 54 / 6e-08 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.010G080900 [exp] 50 / 1e-07 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.013G040300 [exp] 49 / 3e-07 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1) Potri.006G101300 [exp] 50 / 1e-06 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.005G052800 [exp] 48 / 1e-06 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035435 [exp] 340 / 2e-117 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10042037 [exp] 340 / 5e-117 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10018041 [exp] 330 / 9e-113 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 293 / 4e-101 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10043389 [exp] 208 / 4e-67 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10019545 [exp] 207 / 1e-66 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10001775 [exp] 50 / 1e-07 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10039391 [exp] 47 / 2e-06 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10004807 [exp] 49 / 3e-06 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 48 / 5e-06 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain
Representative CDS sequence Show only first row Show all	>Potri.006G047300.1 pacid=42770156 polypeptide=Potri.006G047300.1.p locus=Potri.006G047300 ID=Potri.006G047300.1.v4.1 annot-version=v4.1 ATGTCAGGCTACCCTCATCCACAAGCAGGCTACGGTTACGGCCAACCGCAACAACCGCAACAACCCCAACCCTACGGCTCCGCTGCACCATACTCCTCTC CTTATGGCGCACAACCACAACCCGCTGCTCCATACGGCACCGCACCACAACCCGCTGCTGCATATGGAGCCGCACAACCTGCCGCTCCATACGGCCACCC CTACGGTGCTCCCGCTCCCGCTCCCGGCACCAAGCCACCGAAGGACAAACCCCAAGCCTCCGCACCTGGTGGCTATCCTTCTGCACCTTACGGCAGCAGC CCCTTCGCCTCTCTGATGCCCTCCACCTTCCCTCCAGGGACTGACCCCAGCATCGTCGCCTGCTTTCAAGTCGCCGATCAGGACGGTAGCGGGATCGTTG ATGACAAAGAGCTGCAGAGAGCCTTATCGAGCTATAATCAGAGCTTCAGCTTGAGGACTGTTCACCTTCTCATGTATCTCTTCACGAACACCAACACCAG GAAGATCGGGCCAAAGGAATTCGCTCCACTGTTCTACAGTTTGCAGAACTGGAGAACGAACTTTGAGAGATTTGATAGGGACAGGAGCGGCAAAATCGAT CCTAATGAGCTGAGAGAGGCACTTATGAGTTTAGGATTTGCAGTCTCACCAGTTGTTTTGGATTTGCTAGTATCCAAGTTTGATAAAACTGGAGGGAAGA ACAAGGCCATAGAATACGACAATTTCATCGAATGCTGTCTGACTGTAAAGGGACTGACTGATAAATTCAAAGAGAGGGATACTGCATATTCTGGTTCAGC AAGTTTCACTTATGAAAATTTCATGCTTACTGTCCTTCCTTTCCTCATTGCATAG
AA sequence Show only first row Show all	>Potri.006G047300.1 pacid=42770156 polypeptide=Potri.006G047300.1.p locus=Potri.006G047300 ID=Potri.006G047300.1.v4.1 annot-version=v4.1 MSGYPHPQAGYGYGQPQQPQQPQPYGSAAPYSSPYGAQPQPAAPYGTAPQPAAAYGAAQPAAPYGHPYGAPAPAPGTKPPKDKPQASAPGGYPSAPYGSS PFASLMPSTFPPGTDPSIVACFQVADQDGSGIVDDKELQRALSSYNQSFSLRTVHLLMYLFTNTNTRKIGPKEFAPLFYSLQNWRTNFERFDRDRSGKID PNELREALMSLGFAVSPVVLDLLVSKFDKTGGKNKAIEYDNFIECCLTVKGLTDKFKERDTAYSGSASFTYENFMLTVLPFLIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10300			Calcium-binding EF-hand family...		Potri.006G047300 [exp]	0	1
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.015G063400 [exp]	1.00	0.9778	Pt-ATH2.2
AT2G48140		EDA4	embryo sac development arrest ...		Potri.005G212000 [exp]	2.00	0.9777
AT5G62280			Protein of unknown function (D...		Potri.015G130500 [exp]	4.58	0.9574
AT2G48140		EDA4	embryo sac development arrest ...		Potri.002G050200 [exp]	4.58	0.9697
AT2G30210		LAC3	laccase 3 (.1)		Potri.019G124300 [exp]	4.89	0.9568
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	8.00	0.9689
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	9.48	0.9575
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	10.39	0.9467
					Potri.004G179877 [exp]	14.28	0.9198
AT4G35160			O-methyltransferase family pro...		Potri.011G059500 [exp]	15.49	0.9498	Pt-OOMT2.14,FOMT7

Compare expression of checked genes

Potri.006G047300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.