Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20990 289 / 2e-98 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08080 265 / 2e-88 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 241 / 5e-79 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT4G21000 228 / 3e-74 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT2G28210 223 / 9e-73 ATACA2 alpha carbonic anhydrase 2 (.1) AT5G04180 214 / 2e-68 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT3G52720 186 / 1e-57 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT5G56330 168 / 5e-50 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043700 [exp] 444 / 6e-159 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 289 / 5e-98 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.009G010200 [exp] 275 / 2e-92 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 274 / 3e-92 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G121900 [exp] 258 / 6e-86 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G212900 [exp] 202 / 6e-64 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.016G079600 [exp] 201 / 2e-63 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042030 [exp] 374 / 1e-130 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018034 [exp] 323 / 6e-111 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021455 [exp] 275 / 2e-92 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 270 / 2e-90 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10014412 [exp] 265 / 2e-88 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018017 [exp] 266 / 4e-88 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10023915 [exp] 263 / 1e-87 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 262 / 2e-87 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042013 [exp] 253 / 2e-83 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10031027 [exp] 249 / 2e-82 AT4G20990 235 / 2e-77 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [poplar] [flax] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Potri.006G047400.1 pacid=42768421 polypeptide=Potri.006G047400.1.p locus=Potri.006G047400 ID=Potri.006G047400.1.v4.1 annot-version=v4.1 ATGGCCAGCACCAGTCACTTCAATGTCTACAACATTAACATTTCGAGCTTTCTCCTTCTTGTTTCTCTCGTCATAGTCTCATTTTCACTCACCATCTGCT TTGCTTCGGAGTCTGAAGTTGAGAAAGAAAGTGAATTTGCATATGTAGAAGGAACTGGAAAAGGGCCAAAGAATTGGGGAAAGATTAACCCACATTGGGA AACTTGTGGTAAAGGACAAATGCAGTCTCCTATCGATCTCCTTGACGGGAGGCCAGTGCAAGTTTTTCCCAACTTAGGAAAGCTGCGTAGGGATTACCAA GCAGCTCCTGCAGCCGTGAAGAATAGGGGGCATGACATTACAGTGATTTGGAAAGGAGATGCAGGAAAAATCACGATTAATAATACTAGTTACCAGCTGA AGCAAGGCCATTGGCATTCACCCTCAGAGCACACATTCAATGGTTCAAGGTATGACCTGGAGCTTCACCTAGTTCACTATAGCTCTCAGGGAGGGGTAGC TGTTTCTGCAATTGTTTACAAATATGGTCGGCCTGATCGCTTCCTTTCAAGGTTGTTCCACCATATAACTCATGTTGACCCCGAAGAAGAGATAGATGCG GGGATTGTCAACCCAGGAGATATCAAATTTGGGAGCAGAAAGTATTACAGATATATCGGTTCCCTTACAAGTCCTCCTTGCACCGAAGGTGTTATCTGGA CAATAGTGAAGAAGGTCAGGACAGTCTCAAGGGAGCAAGTCAAAGCATTAAGGGATGCTGTTCATGATGGATATGAGGCAAATGCAAGACCAACTCAGTC ATCGGATGGAAGAGCAGTTTTTGAGTACATTCCAAGAGTGATTCAGGCCTCTGCCTAG
AA sequence Show only first row Show all	>Potri.006G047400.1 pacid=42768421 polypeptide=Potri.006G047400.1.p locus=Potri.006G047400 ID=Potri.006G047400.1.v4.1 annot-version=v4.1 MASTSHFNVYNINISSFLLLVSLVIVSFSLTICFASESEVEKESEFAYVEGTGKGPKNWGKINPHWETCGKGQMQSPIDLLDGRPVQVFPNLGKLRRDYQ AAPAAVKNRGHDITVIWKGDAGKITINNTSYQLKQGHWHSPSEHTFNGSRYDLELHLVHYSSQGGVAVSAIVYKYGRPDRFLSRLFHHITHVDPEEEIDA GIVNPGDIKFGSRKYYRYIGSLTSPPCTEGVIWTIVKKVRTVSREQVKALRDAVHDGYEANARPTQSSDGRAVFEYIPRVIQASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G047400 [exp]	0	1
					Potri.007G034101 [exp]	4.58	0.9705
					Potri.005G168401 [exp]	9.38	0.9674
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Potri.014G021250 [exp]	13.03	0.9437
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.001G189900 [exp]	13.41	0.9659
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.002G031700 [exp]	13.49	0.8713
AT4G08300			nodulin MtN21 /EamA-like trans...		Potri.005G176200 [exp]	13.74	0.9642
AT4G10810			unknown protein		Potri.002G116200 [exp]	14.49	0.8907
					Potri.007G034000 [exp]	14.96	0.9635
					Potri.009G081850 [exp]	17.23	0.9557
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.014G108500 [exp]	18.43	0.9585

Compare expression of checked genes

Potri.006G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.