Plant FIBer expression Database

EIF3.4 (Potri.006G047600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol EIF3.4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57290 800 / 0 ATINT6, ATEIF3E-1, TIF3E1, INT-6, EIF3E eukaryotic translation initiation factor 3E (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G043800
[exp]
854 / 0 AT3G57290 787 / 0.0 eukaryotic translation initiation factor 3E (.1)
Potri.001G222700
[exp]
42 / 0.0007 AT2G26990 772 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1)
Potri.009G020900
[exp]
42 / 0.0007 AT2G26990 815 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018035
[exp]
821 / 0 AT3G57290 806 / 0.0 eukaryotic translation initiation factor 3E (.1)
Lus10042031
[exp]
819 / 0 AT3G57290 804 / 0.0 eukaryotic translation initiation factor 3E (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01399 PCI PCI domain
CL0123 PF09440 eIF3_N eIF3 subunit 6 N terminal domain
Representative CDS sequence
>Potri.006G047600.1 pacid=42769290 polypeptide=Potri.006G047600.1.p locus=Potri.006G047600 ID=Potri.006G047600.1.v4.1 annot-version=v4.1
ATGGCGACTTACGATCTGACCCCACGAATCGCACCGAATCTAGACCGCCACTTAGTATTCCCTCTATTAGAATTCCTTCAAGAACGTCAGCTTTACCCAG
ATGAGCAGATCTTAAAAGCCAAAATCGAGCTTTTAAACAAAACAAACATGGTTGATTACGCTATGGACATCCACAAAAGTCTTTACCACACTGAAGATGT
CCCTCAAGATATGATTGAGAGGAGGGTAGAGGTAGTGGCAAGATTGAAAGCATTGGAGGAGGCTGCTACACCCCTGGTTTCATTCTTGCAGAATGCGAGT
GCTGTGCAGGAGTTGAGGGCCGATAAGCAATATAATCTTCAGATGCTTCATGACCGTTATCAGATTGGTCCGGAGCAGATTGAAGCATTATATCAGTATG
CCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGACTATCTGTATCAGTACAGGGCCTTGTGCACTAACAGTGAAAGGAGTCTGAGTGCATT
GTGGGGAAAGATGGCAGCTGAGGTACTGATGCAAAACTGGGATATTGCTCTTGAAGAGCTTAACCGGCTGAAAGAAATAATTGATTCTAAGAGCTTCTCA
ACACCTTTGAATCAGGTTCAGAGTAGAATATGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAACAATGAGAATGGAAGGACACAGATTATTGACTTGT
TTAATCAGGACAAGTATCTCAATGCCATTCAAACCAATGCACCCCATCTTTTGCGTTACCTAGCAACTGCATTCATTGTCAACAAAAGAAGAAGACCTCA
ATTCAAGGACTTTATAAAGGTTATTCAGCAAGAGCAGCACTCATACAAAGATCCTATCACAGAGTTTTTGGCTTGTGTCTATGTTAATTATGATTTTGAT
GAGGCACAAAAGAAGATGAAGGAGTGCGAAGAAGTGATACTAAATGATCCTTTCCTTGGCAAACATCTAGAAGATAGCAACTTTTCTACTGTGCCGTTGA
GAGATGAGTTCCTTGAAAATGCCCGTCTATTTGTCTTCGAAACCTATTGCCGGATACATCAGCGCATCGACATGGAAGTCCTTGCAGAGAAATTGAACTT
GAATTATGAGGAGGCTGAGAGATGGATTGTGAATCTCATCCGTAACTCAAAGCTTGATGCTAAGATTGATTCACAATCAGGAACTGTTATCATGGAGCCC
AACCATCCCAACGTGTATGAGCAGTTGATAGATCACACCAAAGCACTATCAGGCCGTACTTCCAAGTTAGTCAGTCAGATTCTAGAGCATGCACAGGGAC
AGTCTGCTCGATAA
AA sequence
>Potri.006G047600.1 pacid=42769290 polypeptide=Potri.006G047600.1.p locus=Potri.006G047600 ID=Potri.006G047600.1.v4.1 annot-version=v4.1
MATYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMIERRVEVVARLKALEEAATPLVSFLQNAS
AVQELRADKQYNLQMLHDRYQIGPEQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKMAAEVLMQNWDIALEELNRLKEIIDSKSFS
TPLNQVQSRIWLMHWSLFIFFNNENGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFD
EAQKKMKECEEVILNDPFLGKHLEDSNFSTVPLRDEFLENARLFVFETYCRIHQRIDMEVLAEKLNLNYEEAERWIVNLIRNSKLDAKIDSQSGTVIMEP
NHPNVYEQLIDHTKALSGRTSKLVSQILEHAQGQSAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57290 ATINT6, ATEIF3E... eukaryotic translation initiat... Potri.006G047600
[exp]
0 1 EIF3.4
AT2G31725 Eukaryotic protein of unknown ... Potri.013G127400
[exp]
2.44 0.9303
AT1G57720 Translation elongation factor ... Potri.003G004700
[exp]
3.46 0.9368
AT1G16740 Ribosomal protein L20 (.1) Potri.017G119300
[exp]
3.46 0.9222
AT5G25757 RNA polymerase I-associated fa... Potri.006G241300
[exp]
5.47 0.9165
AT1G16870 mitochondrial 28S ribosomal pr... Potri.013G153900
[exp]
6.85 0.8860
AT1G18070 Translation elongation factor ... Potri.019G062500
[exp]
7.61 0.8995
AT4G11630 Ribosomal protein L19 family p... Potri.012G086800
[exp]
8.00 0.9082
AT3G11710 ATKRS-1 lysyl-tRNA synthetase 1 (.1) Potri.006G166000
[exp]
10.72 0.9014
AT3G09630 Ribosomal protein L4/L1 family... Potri.006G132551
[exp]
14.89 0.8920
AT3G20000 TOM40 translocase of the outer mitoc... Potri.007G000200
[exp]
15.55 0.9016 Pt-TOM40.1

Potri.006G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.