Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41520 641 / 0 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT5G12430 618 / 0 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT3G58620 100 / 5e-21 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT4G02100 96 / 5e-20 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT5G65160 92 / 1e-18 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT3G62570 90 / 4e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 86 / 7e-17 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G47440 84 / 3e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G53300 83 / 1e-15 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT2G42580 81 / 5e-15 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043900 [exp] 1850 / 0 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.001G255000 [exp] 630 / 0 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.007G091200 [exp] 95 / 2e-19 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 93 / 6e-19 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G197300 [exp] 91 / 2e-18 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.002G094800 [exp] 90 / 6e-18 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G122300 [exp] 87 / 4e-17 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.005G166300 [exp] 87 / 7e-17 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 85 / 2e-16 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035427 [exp] 828 / 0 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031042 [exp] 696 / 0 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019041 [exp] 631 / 0 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 630 / 0 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031041 [exp] 166 / 3e-47 AT2G41520 128 / 5e-35 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10028154 [exp] 93 / 1e-18 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 89 / 1e-17 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10002438 [exp] 88 / 2e-17 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10010272 [exp] 78 / 4e-14 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10036335 [exp] 76 / 1e-13 AT4G02100 645 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.006G047700.2 pacid=42769243 polypeptide=Potri.006G047700.2.p locus=Potri.006G047700 ID=Potri.006G047700.2.v4.1 annot-version=v4.1 ATGTCACCGGCTGCGGCCGTCGATATCAGGTCACCCGTCACCTCCAAACATCCTTCCTCTTTCCAAAACCCTAATTCCAATCCAATCGAAAATAACCACC GCCATAGTGTAAAGGCTCCGGTTTTTGGTAGCGCAAGTGAAATCGATATGAATGAAAACGGGTCGCAAATCGGGTTGGGTCGGGCGCGGCCGAGGTTGGT GAAGGTGAGGAGGCGGTTACATGGGAGGAACAGAGGAGCGGCTCCAGGTGAGTTGTGCGGGTCCGGGTCGGGTTTTAACCCGTTTAAACCAGCAAGTGAT GATTGTTGTAGCAGTGATAGTTATTTAAATGGGGATAGTAATGTGTCCAATGTGGGTTTTGTGTTTGGTGCAAATGGGGGTGTAAAAAGTGGGAGGTTAG ATTTGGATTTGAATTCTCGAGTGGAATTGGATTTTAAAGAAAAAGAATTTGGTGGAAGTGTGGGGCAATTGAGAGAAAAGGAGCCAACTTTGGATTCAAA AATGGAGGCTGGGGAGTTTGGTAACGTGGGTTTTGTGTTTGGTGCTAATGGGAATAATGTCGGGGTGAAATTTGTTTCAGAGAAGAGACAATTGAATGAG TGTGGTGTGAATGCATGCGAAGCAGAGAATGAAAAGGTCAGGAATGATGGTGACAGCGAGTCTTATGATGACAGGAGTGAATTAGGATCGGGTTTGAATA CCAATGAGGGATATTCTAGTGGAAATGGTGTGAAGTTGGGTTCTGATGATGTCGGTTTTGTGTCTGATGCTACTCATGATGGAACTTGTACAAACATGGG GGTTTCTGGTTCAGGTTTTGTGTTTGGTCCAAGTTGGTTTGATGGAAAGTTAAATTCGAACGAGGGACAGAGAGAATCAGGTGAAAGTTCTGGAGATTCA GCCATTGCTGATACTGGGACGATGAAGGTTAGGCATGAGGCCGAGCTTTATAAAGTGAAAGGCAATGGTAAGGGTATTTTTGTGTCACCTAGCAGCAGCA AGAAAAGTTCCTTTCTCAATGAAAGTGTGGTTACAAAGTGCCCTGTTGAGGTCAAGTCAAGTGGCGAAACTTTTTTAAATTGCAGTATTTCAATGGATCA AAATGGTAATCTGAATTCTAGTGTCAATGATAAGTGTACGTTTGCTTCATTTGCAAATAGTAGTAATGTAGCTAGTGCTTCTAGCATGAACCCAATATTT AATCTCCCAGAAGATATTAAGAAACTTAACATTAATGAGTTTAAGAACGTTCATGGAACTGACGATAAGAATTCATCTGCTAAAGATGATTCTTCATTTG TATTCAGAAGCAGTAAAATGGTTTCTGCCTCTTCTATTGGAAGTTCTGGTGGTGATAAATTTGAATCCAGTGACAAAAACAGAAGTTGTAATACGGCTAG CACTTCTATTGGAATTTCAAGTTCGGGATTATTTACATTTCAGGCAGGATGTGCACAAAGCTCTTTTGAGGCCCAATTATCTCAAGATCAAGTGAATGAT GATACACAACTCAATGGAGCTGCTGCTCAAACTTCATTGTCATCGGGTGGTTTTGACTCCCAAGTAAATAATGTAGTTTCTGAAGCAACAACTGTGGCTG GAGTTGATAAGGAAAATAACGAAAGTAGTTCTACAAACACACTGGGTGGATTAGGGATGCCCTTCACAGACTTCAAAACTCCATGGGATCCTTCTTGTTT AAAAACAAGTCTATTTCCTGAATTAAATAAGAAACTGGAATTTACTGCAAATAGCAGATCAAAGAAGGGCAAAAGATCACAAATGAGGATACGGTTGAAG CAAGATTCCTTATGCAAGCAACAGCAAGAGCAAGAGCAAGATCATGTGCAAAATGAAAGGAGTGCCCAAGAAAATCTAAATACCCCCACCAGTTACTCAC CCATGGATTTTTCCCCTTATGAGGAAACTACAGCTGAGAAATTTTCTGAAGAAACTTTTGTGACATCAAATGATTCCAACCATCAAGAAAATAATCGTGC GTCCTCTATCTTGCATTCAACCGAGATTGCTGGTCTCAGAGAGAGTGGAGGATTAGATACTGATAAAGATGATGGGAAACCTAGAGAGAAGATGAACCCG GAGAATTCTGATTCTGGTTCTGAAAGATGTTTCATGGGTGATTACATCTCTAAAGAGTTTGTTTTTGGAGCTGAAATGCCCTGCTCTGGTTTCAACTTTG TGCAGGTCAGTAGCAGGGATGCTGGCGCTGCTGAAGATACACATGGATTAAAGACAGAAAGCAGCCATCAAATGCAATTTTCCTTTGCTTCAGGATCGGG AGACCTAGATGGGAGGAAATTTTTCTTTTCTGCTTCATCCTCTGAACAAATTAGTTCATCAGCACCAAAGCGTCAGTTTAGAAAGAAATATAGGAGGAAA AATCCATGTGCACCATACGTTGTTGCCCCAAACCCAAATGGACAAGAAGAAGATTTATCTACTCCTCAAAGAAAGGTGGGAAATAAATCTGAAATAAATG AATTAGCCAAGCAAGGCTCAATCTCATCCACTGACTCTGTTCAGGAAGCATGTGAGATGTGGCGAGCAAGGGGGAATCGTGCTTATCAAAATGGGGATAT GTCTAAAGCCGAGGATTTTTACACAAGTGGGATAAATTCCATTCCTTCTAGTGAGATGTCAGGATGCTGCCTCAAGCCTCTTGTTATTTGCTATAGCAAC CGTGCAGCAACACGAATGTCTCTTGGAAACATAAGGGAAGCTTTAAGAGATTGCATAAAGGCTTCTGGTCTAGATCCCAACTTTTTGAAAGTTCAAATGA GGGCTGCTAATTGTCATCTTCAGCTGGGAGAAGTTGAGGATGCACTTCACTATTTTAGTAAGTGCTTGGAATCTGGAGCTGGTGTGTGTTTAGATCGAAG AACCACGATAGAAGCTGCTGATGGCTTACAGAAAGCTCAGAAAGTAGCAGAGTGTACAAATCGTTCTGCAAAACTTTTGGAAGAGAGAACATATGATGCA GCAGTTAATGCTCTAGATGCGATCGGCGAGGCCTTGTCAATTAGCCCCTACTCAGAAAGATTGCTGGAAATGAAAGCGGAATTTCTGTTTATGTTACAGA AGTATAAAGAGGTGATTCAGCTGTGTGAGCAGACTCTTTGTGCTGCTGAAAAATATTTTGCTTCAGTAGGTGCGGATGGGCAGTTTGTGGATATTGGCTG TTCTGAAAGTGAAAATTGCTCATTTGCGAGGGTGTGGAGATGGCACTTGATTTCAAAGTCCAACTTTTATCTTGGAAAGCTTGAGGTGGCTCTTGATTTA CTTGAGAAATTAGAGCAAATGAGATCCATCAGTTACAAGTATGCAAATGCGAATAAGATATTGGAATCATCTGTTACATTAGCTGTCACCGTACGCGATC TTTTACGTCATAAGAGTGCAGGGAATGAAGCAGTTCGATCAGGACGGTATGCAGAAGCTGTAGAGCATTATACTGCTGCTTTATCAAACAACATTGAATC CCGCCCTTTTTCAGCAATTTGTTTTGGAAACCGTGCTGCTGCACACCAAGCATTGGGGCAGATTGCTGATGCCATTGCAGATTGCAGCCTAGCTGTAGCC CTTGATGGAAATTACTCGAAGGCAGTTTCCAGAAGAGCAGCCTTGCATGAGATGATTAGAGACTATGGACAGGCAGCTATTGACCTTCAAAGACTTGTAT CCGTTCTTGAAAATCTATCTGATGAAAAAGTCAGACAGTCCAGCAAACCTGCTAGATCCACCAGTAGGACAAAAGAATTAAGGCAAGCTCGTCAGCATTT GTCATTAATGGAAGAGGAGGCTAAGAAAGGAATCCCATTGGATTTATATCGTATTTTGGGAGTCAAAGATTCTGACACGGCAGCTGATATAAAAAAGGCA TACCGCAAAGCAGCTCTTAAACATCACCCAGACAAGGCTGGTCAGTTCCTGGCAAGAAGTGAAAGTGGTCATGACAGGCAGCTCTGGAAGGAAATTGTTC AGGAGGTTCACGCAGATGCTGACAGGCTATTTAAGATGATTGGAGAAGCATATGCAGTACTCTCAGACTCCTCAAAGCGGTCAGAATATGATCTTGACGA GGAAATTAGAAAAGCATCAAAGGAAAACAATGGAAGCAGTCATAGAAGAACATACACGCGCAGCAACTCAAATGAGAGAAATGAATACCGTCGACATTGG CAGGATAATTGGAAGACTAATGGTTATTCACGTTGGTGA
AA sequence Show only first row Show all	>Potri.006G047700.2 pacid=42769243 polypeptide=Potri.006G047700.2.p locus=Potri.006G047700 ID=Potri.006G047700.2.v4.1 annot-version=v4.1 MSPAAAVDIRSPVTSKHPSSFQNPNSNPIENNHRHSVKAPVFGSASEIDMNENGSQIGLGRARPRLVKVRRRLHGRNRGAAPGELCGSGSGFNPFKPASD DCCSSDSYLNGDSNVSNVGFVFGANGGVKSGRLDLDLNSRVELDFKEKEFGGSVGQLREKEPTLDSKMEAGEFGNVGFVFGANGNNVGVKFVSEKRQLNE CGVNACEAENEKVRNDGDSESYDDRSELGSGLNTNEGYSSGNGVKLGSDDVGFVSDATHDGTCTNMGVSGSGFVFGPSWFDGKLNSNEGQRESGESSGDS AIADTGTMKVRHEAELYKVKGNGKGIFVSPSSSKKSSFLNESVVTKCPVEVKSSGETFLNCSISMDQNGNLNSSVNDKCTFASFANSSNVASASSMNPIF NLPEDIKKLNINEFKNVHGTDDKNSSAKDDSSFVFRSSKMVSASSIGSSGGDKFESSDKNRSCNTASTSIGISSSGLFTFQAGCAQSSFEAQLSQDQVND DTQLNGAAAQTSLSSGGFDSQVNNVVSEATTVAGVDKENNESSSTNTLGGLGMPFTDFKTPWDPSCLKTSLFPELNKKLEFTANSRSKKGKRSQMRIRLK QDSLCKQQQEQEQDHVQNERSAQENLNTPTSYSPMDFSPYEETTAEKFSEETFVTSNDSNHQENNRASSILHSTEIAGLRESGGLDTDKDDGKPREKMNP ENSDSGSERCFMGDYISKEFVFGAEMPCSGFNFVQVSSRDAGAAEDTHGLKTESSHQMQFSFASGSGDLDGRKFFFSASSSEQISSSAPKRQFRKKYRRK NPCAPYVVAPNPNGQEEDLSTPQRKVGNKSEINELAKQGSISSTDSVQEACEMWRARGNRAYQNGDMSKAEDFYTSGINSIPSSEMSGCCLKPLVICYSN RAATRMSLGNIREALRDCIKASGLDPNFLKVQMRAANCHLQLGEVEDALHYFSKCLESGAGVCLDRRTTIEAADGLQKAQKVAECTNRSAKLLEERTYDA AVNALDAIGEALSISPYSERLLEMKAEFLFMLQKYKEVIQLCEQTLCAAEKYFASVGADGQFVDIGCSESENCSFARVWRWHLISKSNFYLGKLEVALDL LEKLEQMRSISYKYANANKILESSVTLAVTVRDLLRHKSAGNEAVRSGRYAEAVEHYTAALSNNIESRPFSAICFGNRAAAHQALGQIADAIADCSLAVA LDGNYSKAVSRRAALHEMIRDYGQAAIDLQRLVSVLENLSDEKVRQSSKPARSTSRTKELRQARQHLSLMEEEAKKGIPLDLYRILGVKDSDTAADIKKA YRKAALKHHPDKAGQFLARSESGHDRQLWKEIVQEVHADADRLFKMIGEAYAVLSDSSKRSEYDLDEEIRKASKENNGSSHRRTYTRSNSNERNEYRRHW QDNWKTNGYSRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	0	1
AT5G11700			unknown protein		Potri.018G058300 [exp]	1.00	0.8839
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	2.00	0.8738
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.001G065600 [exp]	2.44	0.8637
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	3.46	0.8575
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.011G003500 [exp]	6.00	0.8598
AT2G39260			binding;RNA binding (.1)		Potri.008G045400 [exp]	6.70	0.8509
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	7.48	0.8547	PAFC901
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	8.00	0.8520
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	8.66	0.8588
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	12.64	0.8448

Compare expression of checked genes

Potri.006G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.