Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41510 771 / 0 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 711 / 0 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 528 / 0 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G56970 470 / 1e-161 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT5G21482 434 / 1e-147 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT2G19500 422 / 5e-143 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 414 / 1e-139 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G044100 [exp] 973 / 0 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 791 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 787 / 0 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 542 / 0 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 541 / 0 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 474 / 5e-163 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 441 / 2e-150 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 380 / 2e-126 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G064800 [exp] 49 / 6e-06 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005317 [exp] 527 / 0 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10024289 [exp] 524 / 0 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10039574 [exp] 523 / 0 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10016363 [exp] 475 / 1e-165 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10026471 [exp] 445 / 1e-151 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10018039 [exp] 427 / 3e-147 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031046 [exp] 426 / 3e-146 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 419 / 6e-144 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10003845 [exp] 419 / 3e-143 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031188 [exp] 387 / 2e-129 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF09265 [poplar] [flax] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Potri.006G047900.1 pacid=42767903 polypeptide=Potri.006G047900.1.p locus=Potri.006G047900 ID=Potri.006G047900.1.v4.1 annot-version=v4.1 ATGGGATCACCATCTTCTGCTTCTAGAAGACAGAACAACCTTCTATTCCTTGTATTTATTATGATCCTTTTCTTTTACTCAATACCAGATAAAATCAATC TTTGTTCCAACCAATCTTCTGTCAGCCCAAGTGTGATTCCATATAAGAGCTCCTCCAACATCTCTTCATTGGAAACACTAAAGCTAGATGGCTACTTCAG CTTTGACAATATCGACTACGCAGCCAAGGACTTTGGCAACATGTATCATTTCCTACCATCGGCAGTTCTACATCCAAAATCAGTTTCTGATATTTCCAAC ACTATAAAGCATATTTTCAAAATGGGTTCCACTTCGCAGCTAACCGTTGCTGCTAGAGGCCACAGTCACTCCCTTCAAGGTCAGGCACAAGCTCATCAAG GTATAGTAATCAACATGGAATCACTTCAGGGACCAGAGATGCAAGTTCACACCGGAGAGCTGCCTTATGTGGATGCATCAGGTAGTGAGTTGTGGATTAA TATTCTACATGAGACTCTTAAATACGGGCTTGCACCAAAGTCTTGGACGGACTACCTTCATCTCACCGTTGGAGGCACCTTATCAAATGCCGGAATTAGT GGACAGGCATTCAAACATGGACCACAGATTAACAACATTTACCAATTGGAGGTTGTCACAGGCAAGGGAGAAGCAGTTACCTGTTCAGAGAATAAGAACG CGGATCTCTTTTATGGTGTTCTTGGAGGACTTGGGCAGTTTGGTATCATCACTAGAGCGAGAATATCTCTTGAACCGGCACCAAAGATGGTGAAATGGAT CAGAGCACTATATGACGAATTCTCTAAATTTTCCAGTGACCAAGAACATTTAATATCCAAGAATTCCTTCGACTACATCGAAGGGCTTGTAATAATAAAC AGAACTGGTCTTCTCAACAACTGGAGATCCTCCTTCAAGCCAAAAGACCCTCTTCAAGCCAGTCAATTTATTTCAGAAGGAAAAACTCTTTACTGTCTGG AAATTGCCAAATACTTCAACCCAAACGAGTCTGATGCGATGAATCAGGAAACTGAGAGCCTATTGTCAGAACTGAGTTATATTCCATCCACACTCTTTCT GTCAGAAGTTTCTTATGTGGAATTCCTGGACAGAGTCCACCTGTCTGAAATCAAACTCCGAGCAAAAGGTTTATGGGACATTCCTCACCCATGGCTGAAT CTTCTAATCCCAAAAAACAAAATTTTTGAATTTGCTCAAGAGGTCTTTGGAAATATTCTTACAGACAGCAGCAATGGTCCCATCCTCATCTATCCGGTCA ATAAGTCCAAGTGGGATAACCGAACATCCTTAATCACCCCAGAAGAAGATACTTTCTACCTAGTGGCGTTCTTATCCTCTGCAATGCCATCTTCCACAGG ACGAGATGGCTTGTTTCACATTTTAGCTCAAAACCAAAGAATTCTAGGTTTCTGTTCCTCGACTAGTCTTGGGGCCAAGCAATATTTGCCTCATTACAGC ACCCAGGAAGAATGGCAAACTCATTTTGGTCCGAAGTGGGAAGTTTTTGTACTAAGGAAATCAACTTATGACCCAATGGCAATCCTAGCTCCTGGCCAAC GAATCTTCAGGAGGAAATAG
AA sequence Show only first row Show all	>Potri.006G047900.1 pacid=42767903 polypeptide=Potri.006G047900.1.p locus=Potri.006G047900 ID=Potri.006G047900.1.v4.1 annot-version=v4.1 MGSPSSASRRQNNLLFLVFIMILFFYSIPDKINLCSNQSSVSPSVIPYKSSSNISSLETLKLDGYFSFDNIDYAAKDFGNMYHFLPSAVLHPKSVSDISN TIKHIFKMGSTSQLTVAARGHSHSLQGQAQAHQGIVINMESLQGPEMQVHTGELPYVDASGSELWINILHETLKYGLAPKSWTDYLHLTVGGTLSNAGIS GQAFKHGPQINNIYQLEVVTGKGEAVTCSENKNADLFYGVLGGLGQFGIITRARISLEPAPKMVKWIRALYDEFSKFSSDQEHLISKNSFDYIEGLVIIN RTGLLNNWRSSFKPKDPLQASQFISEGKTLYCLEIAKYFNPNESDAMNQETESLLSELSYIPSTLFLSEVSYVEFLDRVHLSEIKLRAKGLWDIPHPWLN LLIPKNKIFEFAQEVFGNILTDSSNGPILIYPVNKSKWDNRTSLITPEEDTFYLVAFLSSAMPSSTGRDGLFHILAQNQRILGFCSSTSLGAKQYLPHYS TQEEWQTHFGPKWEVFVLRKSTYDPMAILAPGQRIFRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.006G047900 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150100 [exp]	3.16	0.7983
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.014G156400 [exp]	13.26	0.6987	Pt-NFR1.2
					Potri.019G133300 [exp]	18.16	0.6997
					Potri.003G056450 [exp]	20.39	0.7016
AT4G32060			calcium-binding EF hand family...		Potri.018G118089 [exp]	25.37	0.7937
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.011G102500 [exp]	28.77	0.7086	Pt-TDY1.1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150300 [exp]	34.46	0.7234
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150200 [exp]	43.55	0.7192	CYP76T2,Pt-CYP76.4
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150400 [exp]	47.83	0.7096
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.001G460801 [exp]	48.83	0.5550

Compare expression of checked genes

Potri.006G047900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.