Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10140 426 / 7e-149 RECA3 RECA homolog 3 (.1) AT2G19490 297 / 1e-97 recA DNA recombination family protein (.1) AT1G79050 186 / 2e-54 recA DNA recombination family protein (.1.2) AT3G32920 178 / 6e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057700 [exp] 613 / 0 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.018G067900 [exp] 307 / 1e-101 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.006G148700 [exp] 301 / 2e-99 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.001G438900 [exp] 179 / 4e-52 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042033 [exp] 405 / 1e-140 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10018037 [exp] 407 / 5e-140 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10021585 [exp] 283 / 4e-92 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10017151 [exp] 278 / 3e-90 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10026204 [exp] 185 / 3e-54 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2) Lus10042462 [exp] 185 / 3e-54 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00154 [poplar] [flax] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Potri.006G048000.5 pacid=42766915 polypeptide=Potri.006G048000.5.p locus=Potri.006G048000 ID=Potri.006G048000.5.v4.1 annot-version=v4.1 ATGGCACTTTCAATTCGTTTCAATTCTCTGGCAAGATTTCGCCTTTGCACTCTCTCTCAGCAGAATGGAAGAAGACATGCGGTTACATTTATTGGAAGGA ATGATCACACTCTTTCTTCTGTAGTTTCAGATTTTGAACCTGATGAACTCCATGATGAGGGTGAAGCGAAACAGAAAGATAATGCGCTTCGTTTGGCTCT CACGCAGCTTGCTGGTGAATTTGGTAGAGAGTCTATGCTGTCATTGCAGCGGTTTTTCAGCTCACGAAGAGCTTCTATTATATCAACAGGCTCGTTGAAG CTTGATCTTGCACTTGGAATTGGTGGATTACCGAAGGGAAGAATGGTTGAAATCTATGGGCAAGAAGCTTCTGGCAAGACAACTATTGCACTTCACATTA TCAAGGAAGCTCAAAAGCTTGGAGGATATTGTGCATTTCTTGATGTAGAGAATGCAATGGATCATTCACTTGCTAAATCAATGGGCGTAAACACAGAAAA TCTTCTTATTTCACGTCCAGATTGTGCTGAAAATTTGCTCAGTGTAGTCAACACTCTGACTAAAAGCGGGTCTGTAGATGTGATCGTGGTTGATAGTGTT GCCGCCCTTGTTCCTCAACGTGAGATTGATACTGTGGTGGGAGGCTCCTTTGAAGATATACAATCACGATTAATGACCCAAGCACTTAGGAAGATCAATT ATTCATTGTGCCAATCTCGAACTCTTATTATTTTTCTTAATCAGGTTAGAACAAGTTTAAAATCAGGACGTGCAGAAGAGGTCACCTGTGGTGGAAATGC CTTGAAATTCTATTCGGCAGTACGTTTGAGAATGATCAGAACAGGACTGCTCAAGACTGGGGACAAGGTTACTGGTCTTGGGGTGTGTGCACAAGTCGTG AAAAATAAATTGGCTCCTGCTATGACAAAAGCTGAAATTGGGATACAGTTTGGGAGAGGCTTTTGCTTTGAATCTGAAGTCTTGGAATTAGCTTGTGAGC AGAGTCTCATCAAGAAGGAAGGAAGTAGCTATGTTATTGGCAGAGAGGTATTTAGCAATGAACATGCAGCAGAACAGTATTTAATTGAAAATGAAGGGGT TCTTGATCAAATAGTTGCAAAATTAAGGGGAAAATTACTTCAAAGGAAGATGTGA
AA sequence Show only first row Show all	>Potri.006G048000.5 pacid=42766915 polypeptide=Potri.006G048000.5.p locus=Potri.006G048000 ID=Potri.006G048000.5.v4.1 annot-version=v4.1 MALSIRFNSLARFRLCTLSQQNGRRHAVTFIGRNDHTLSSVVSDFEPDELHDEGEAKQKDNALRLALTQLAGEFGRESMLSLQRFFSSRRASIISTGSLK LDLALGIGGLPKGRMVEIYGQEASGKTTIALHIIKEAQKLGGYCAFLDVENAMDHSLAKSMGVNTENLLISRPDCAENLLSVVNTLTKSGSVDVIVVDSV AALVPQREIDTVVGGSFEDIQSRLMTQALRKINYSLCQSRTLIIFLNQVRTSLKSGRAEEVTCGGNALKFYSAVRLRMIRTGLLKTGDKVTGLGVCAQVV KNKLAPAMTKAEIGIQFGRGFCFESEVLELACEQSLIKKEGSSYVIGREVFSNEHAAEQYLIENEGVLDQIVAKLRGKLLQRKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.006G048000 [exp]	0	1
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.018G142300 [exp]	12.00	0.7126
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	14.76	0.7415
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	23.36	0.7131	Pt-UBP15.2
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	23.87	0.7297
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	34.64	0.7318
AT4G37190			unknown protein		Potri.001G361900 [exp]	45.29	0.6761
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	48.83	0.6884
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	55.13	0.6818
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	55.97	0.6959
AT5G15270			RNA-binding KH domain-containi...		Potri.010G167100 [exp]	56.28	0.6799

Compare expression of checked genes

Potri.006G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.