Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10310 397 / 6e-128 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G47500 278 / 9e-83 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 272 / 3e-80 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT5G27000 268 / 2e-79 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 266 / 2e-78 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 250 / 2e-72 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 244 / 2e-70 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 242 / 9e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 239 / 2e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 187 / 3e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165200 [exp] 281 / 2e-83 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.005G021100 [exp] 279 / 8e-83 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 279 / 2e-82 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.013G011500 [exp] 274 / 4e-81 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.014G125700 [exp] 267 / 1e-78 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 263 / 3e-77 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 244 / 3e-70 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 236 / 2e-67 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 234 / 1e-66 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035442 [exp] 440 / 2e-143 AT3G10310 864 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10031058 [exp] 432 / 2e-139 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10042045 [exp] 413 / 2e-133 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 411 / 2e-132 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 276 / 6e-82 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10001306 [exp] 270 / 1e-79 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10032897 [exp] 270 / 6e-79 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 265 / 1e-77 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 249 / 9e-73 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 252 / 1e-72 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.006G048600.6 pacid=42768733 polypeptide=Potri.006G048600.6.p locus=Potri.006G048600 ID=Potri.006G048600.6.v4.1 annot-version=v4.1 ATGCATTCTGTGAACTCCACTGCAGACGTTCTTAATCTGATGAAACTCGGTGAAGCGAATCGTGTTGTCAGTTCCACTGCACTCAACAACCGGAGCAGTC GTTCCCATAGTATCCTGACAGTTCATGTACATGGTAAAGATGTATCTGGAAGCACCCTCCACAGTTGCCTCCATTTGGTAGACCTTGCAGGAAGTGAAAG AGTGGATAAATCAGAAGTTATGGGAGATAGGCTCAAAGAGGCGCAGTACATTAATAAGTCTCTCTCCTGTCTAGGAGATGTAATCACAGCCTTGGCTCAA AAGAATTCTCATATCCCTTACAGAAACAGCAAACTCACACTTCTACTACAAGATTCCTTAGGGGGACACGCTAAAACGTTAATGTTTGCCCATTTAAGTC CAGAAGGAGATTCTTTTGGTGAAACCATCAGTACTTTGAAGTTTGCTCAGAGGGTATCAACTATTGAACTCGGTGCTGTTCGTGCAAACAAAGAGAGCGG TGAGATTATGCAACTCAAGGATCAGGTTGAGAACCTCAAGAAAGCATTGGCCAGCAAGGAAGCGAAGAATGTGCAGTTTAATAAATTGAAGGACCCAAGA TCTCCATGTGAGATACCAAAAGTGATGCCTGAGCGAACTCCTCCACGTGCACGGAGGCTGAGTATTGAGAATGGCAGCAGCAGGAAGTCTGAGAAAATCA CGAATACTGAAGATAGAAAGGCATCAAAAACCCCTTCTGTACCAACTCGTTCCAAAAGATTAAGCTTGGAAGGGCCAAAGTATGACAAGAAAGAGCATTT CCAGGCAAACGGAGCAGATGATGTAAGCAGGCCCCTACGTTTTGACTCGGTAACACTGCAGAAACATGGTTTTATTCAGGATGCAGAGGCAGTGTCAAAA CCATTTGGGCATTCTGCTAGTGGCAGTTCCTCGGTGGAAGTTTATCGCCTCAATAATTCTCGAAGTCCTACTAGTTTGTATCAGAAGAGAATGATCAAAA CAGATAATAGTAGGACGCAAATTCCAACTCTTCAGCTACCAATAACACCAGAGCCGCAAGTAATTTCCAGAAATGCAGAGGCAGTGTCAAAATCATTAGG GCATTCTGCTAGTGGCAGTTCCACCGTTGAAGTTTATCGCCTCAATACTCGAAGTCCTACTAGTTTGTATCAGAAGAGAATGGTCAAAACAGATAATAGT AGGACGCAAATTCCAACTCTTCAGCTACCAATAACACCAGAACCGCAAGTAATTTCCAGAAATGAGGTTAAGATTCTGGTGCAGAGTGAACTTGGTGTTT CTACAGATTCTCAGGCAGCCAATCTTGTTCGTAGCACTCATGGAAAAGGATCTCAAATAAGGAAATCCCTTCGTACGATTGGAAAACTGATTAACGGCTC CGATAAGAGGAATCAGCAGATTTCAAAGGAAGAATTCTCACCTATCATTGGCATATGCAATGACACTGATCTAAAGACACCACTTACAGCCAATGCCAGG ACACTAAGAAGGCAATCTCTTACAGGAGTTCAAACATCAACATCACGCAGATCTTCTCTTGGAGGAAAGCCTATTGAACCTGATGACCCTAGAAGGGATG CAGATGACCCTAGAAGGAATGCCAAGACGCCCCCTCCAGTCCATCCCTCAACAAAGTTGACAAAACGATGGCTTTAG
AA sequence Show only first row Show all	>Potri.006G048600.6 pacid=42768733 polypeptide=Potri.006G048600.6.p locus=Potri.006G048600 ID=Potri.006G048600.6.v4.1 annot-version=v4.1 MHSVNSTADVLNLMKLGEANRVVSSTALNNRSSRSHSILTVHVHGKDVSGSTLHSCLHLVDLAGSERVDKSEVMGDRLKEAQYINKSLSCLGDVITALAQ KNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHLSPEGDSFGETISTLKFAQRVSTIELGAVRANKESGEIMQLKDQVENLKKALASKEAKNVQFNKLKDPR SPCEIPKVMPERTPPRARRLSIENGSSRKSEKITNTEDRKASKTPSVPTRSKRLSLEGPKYDKKEHFQANGADDVSRPLRFDSVTLQKHGFIQDAEAVSK PFGHSASGSSSVEVYRLNNSRSPTSLYQKRMIKTDNSRTQIPTLQLPITPEPQVISRNAEAVSKSLGHSASGSSTVEVYRLNTRSPTSLYQKRMVKTDNS RTQIPTLQLPITPEPQVISRNEVKILVQSELGVSTDSQAANLVRSTHGKGSQIRKSLRTIGKLINGSDKRNQQISKEEFSPIIGICNDTDLKTPLTANAR TLRRQSLTGVQTSTSRRSSLGGKPIEPDDPRRDADDPRRNAKTPPPVHPSTKLTKRWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048600 [exp]	0	1
AT1G72250			Di-glucose binding protein wit...		Potri.001G436200 [exp]	1.41	0.9854
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.018G062001 [exp]	3.46	0.9642
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	4.58	0.9752
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	4.89	0.9706
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	5.91	0.9711
AT3G15550			unknown protein		Potri.001G175500 [exp]	6.48	0.9680
AT2G33793			unknown protein		Potri.004G042800 [exp]	6.92	0.9576
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	7.21	0.9729
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	7.41	0.9651
AT4G14330			P-loop containing nucleoside t...		Potri.010G069400 [exp]	8.48	0.9680

Compare expression of checked genes

Potri.006G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.