Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10310 506 / 2e-170 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 378 / 1e-120 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 364 / 2e-115 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 350 / 2e-109 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G73860 257 / 4e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 251 / 2e-73 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 249 / 3e-72 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G18410 248 / 1e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G09170 204 / 9e-57 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 157 / 1e-40 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011500 [exp] 392 / 2e-125 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 387 / 9e-124 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 385 / 3e-123 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 382 / 6e-122 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 375 / 3e-118 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 367 / 4e-115 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 265 / 1e-77 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 263 / 3e-77 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 242 / 9e-70 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018049 [exp] 750 / 0 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 740 / 0 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10031058 [exp] 665 / 0 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10035442 [exp] 631 / 0 AT3G10310 864 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 377 / 6e-121 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032897 [exp] 373 / 2e-117 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10020682 [exp] 369 / 3e-117 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10029865 [exp] 365 / 3e-115 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 296 / 2e-89 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009667 [exp] 243 / 4e-75 AT1G73860 342 / 2e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.006G048650.1 pacid=42770136 polypeptide=Potri.006G048650.1.p locus=Potri.006G048650 ID=Potri.006G048650.1.v4.1 annot-version=v4.1 ATGAACAAGAAGGGTCTTTTGTTGGTGTTAATGGAGGATTCTTCAGGAACTGAATTATATGATATATTGGCTTCAAGAAAAGCTGAAGAAGCAGCATGGC GAAGATATCAAGCGGCTTCATGGCTTGAAAATCTCGTGGGTCCAATAGGCATATCAAACAATCCATCAGAGAAAGAGTTCATTTCTCGCTTGAGAAATGG CTTGGTTCTTTGCAATGCTATAAATAAAGTTCATCCAGGGGCAGTGCCTAAGGTGGTGGAGATTCACGCACCTTTACTACCATTAACCCGAGAATCCCAG CCATTACCAGCCTATCAGTATTTTGAGAATGTAAAGAATTTTCTGGTGGCTGTTGAAGAGTTGAGGCTGCCTGCCTTCGAAGCTTCTGATCTTGAAAGGG ATTCTTTGGAGGCAGGGTCGGGGACTAATGTGGTTGATTGCATCTTAGCGCTTAAATCATACCATGAGTACAAGCAGATGAACCCTAATGGATTCTATAA GCCTGCTAGATCTCCTATGGTTATTCATTCTGCTATCAGGAACAATTCTCAACCCATCTCATCAGACTCATGTAGGCGTTTGGACATGTCTGCGGCCTGT GAAAAAGAGACACCAACAGGTTCAGAATTGAAGAAAATTGAAGATTTAATTGCCAAGAAACTTGCTGAGCATATGGCTGATACCAAGGAAAACATGGATA GCAACTTTCTCATGTCCCTCCGTACTGGCAACAACATGGATCCAATGAAGTTGTTCAGTGATATCCTGTTAAGCTGTTTAGGGGATAAGCTTCAAAACAA GTTCCCAGAGTTGAAATCAACAGCTAAAGGTGGTAGCTTACCTGCTCATTCATCAATAAAGCCTAAGGAGGATTCGTCTGAACCAGGAGATTCTAAGTGT TGCCAAGCTTGCTTAAGAAAGGGCAACTGCAACCACAGACAATTAATTCAAATGCAAGAAAAGGAACTTCTGGATATAAAGGCCTTGTTGACGTTGACAA AAAGGGAGTTCCAGGGCTTACAGTCACAACTGCAGACAGATTTGAGAGAACTCGGAATTCAAGTACAAGAGATGTCTACTGCAGCTCTTGGATACCATAG GGTATTGAAAGAGAACAGGAACTTGTACAACATGGTTCAGGATTTGAAAGGAAATATCCGAGTTTACTGCAGAATCAGGCCTGCTTTCGGTGATAGAACA AGCAATGTTATTGATTATATTGGAGATGACGGTTCGCTAGTGATTTCGGATCCACTAAAGCCCCAAAAGGATGGAAAGAAAGTTTTTCAGTTTAACCGGG TGTTTGGACCTACTGCCACTCAAGATGAGGTATTTATGGACACTCAACCACTGATCAGGTCTGTGATGGATGGTTATAATGTATGCATTTTCGCTTATGG TCAAACTGGATCTGGAAAAACATATACCATGAGTGGTCCATCAGGCCGGTCAACCAAGGATATGGGGATTAATTATCTAGCTTTGAGTGATCTCTTCCAG ATGTCTAATGAAAGGAAGGACATCGTAAATTACAGCATTCAAGTTCAAATGGTTGAAATTTACAATGAACAAGTACGAGACCTTCTTGCAGAAGATTCAA CAGCTACCAAAAATTAG
AA sequence Show only first row Show all	>Potri.006G048650.1 pacid=42770136 polypeptide=Potri.006G048650.1.p locus=Potri.006G048650 ID=Potri.006G048650.1.v4.1 annot-version=v4.1 MNKKGLLLVLMEDSSGTELYDILASRKAEEAAWRRYQAASWLENLVGPIGISNNPSEKEFISRLRNGLVLCNAINKVHPGAVPKVVEIHAPLLPLTRESQ PLPAYQYFENVKNFLVAVEELRLPAFEASDLERDSLEAGSGTNVVDCILALKSYHEYKQMNPNGFYKPARSPMVIHSAIRNNSQPISSDSCRRLDMSAAC EKETPTGSELKKIEDLIAKKLAEHMADTKENMDSNFLMSLRTGNNMDPMKLFSDILLSCLGDKLQNKFPELKSTAKGGSLPAHSSIKPKEDSSEPGDSKC CQACLRKGNCNHRQLIQMQEKELLDIKALLTLTKREFQGLQSQLQTDLRELGIQVQEMSTAALGYHRVLKENRNLYNMVQDLKGNIRVYCRIRPAFGDRT SNVIDYIGDDGSLVISDPLKPQKDGKKVFQFNRVFGPTATQDEVFMDTQPLIRSVMDGYNVCIFAYGQTGSGKTYTMSGPSGRSTKDMGINYLALSDLFQ MSNERKDIVNYSIQVQMVEIYNEQVRDLLAEDSTATKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048650 [exp]	0	1
AT2G04039			unknown protein		Potri.002G217400 [exp]	1.41	0.9496
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	6.92	0.9313
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	7.74	0.9435
AT2G25870			haloacid dehalogenase-like hyd...		Potri.006G235301 [exp]	21.97	0.8703
					Potri.002G000452 [exp]	23.40	0.8079
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	26.85	0.9188
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056700 [exp]	33.61	0.9055
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	38.98	0.9115
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	47.77	0.8818
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	48.53	0.8604

Compare expression of checked genes

Potri.006G048650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.