Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGL15.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57390 219 / 2e-71 MADS AGL18 AGAMOUS-like 18 (.1.2) AT5G13790 213 / 1e-68 MADS AGL15 AGAMOUS-like 15 (.1) AT3G57230 146 / 6e-43 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G22950 144 / 2e-42 MADS AGL19 AGAMOUS-like 19 (.1) AT2G42830 143 / 8e-42 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 142 / 1e-41 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 142 / 2e-41 MADS AGL6 AGAMOUS-like 6 (.1) AT4G18960 140 / 1e-40 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 140 / 3e-40 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G24540 138 / 3e-40 MADS AGL24 AGAMOUS-like 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055700 [exp] 243 / 8e-81 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.005G155300 [exp] 153 / 7e-46 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G109601 [exp] 152 / 2e-45 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.011G075800 [exp] 147 / 1e-43 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G150501 [exp] 147 / 5e-43 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G105600 [exp] 145 / 8e-43 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.009G079000 [exp] 143 / 7e-42 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.004G064300 [exp] 142 / 1e-41 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 142 / 2e-41 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039580 [exp] 237 / 5e-78 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10005325 [exp] 236 / 1e-77 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10005302 [exp] 146 / 2e-42 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 145 / 7e-42 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10014143 [exp] 139 / 5e-40 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10009481 [exp] 139 / 2e-39 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 137 / 6e-39 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10010184 [exp] 135 / 8e-39 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10006715 [exp] 135 / 1e-38 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10035942 [exp] 137 / 2e-38 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.006G048700.1 pacid=42768652 polypeptide=Potri.006G048700.1.p locus=Potri.006G048700 ID=Potri.006G048700.1.v4.1 annot-version=v4.1 ATGACTGAAGAGAGGAAAAAAATGGGGAGAGGGAAGATTGAGATAAAGAGGATAGAAAACTTGAATAGCAGGCAGGTCACCTTCTCCAAACGCAGGAATG GGTTGCTGAAGAAAGCTAGAGAATTATCAGTTTTGTGTGATGCTGAGGTTGCTGTCATAGTCTTCTCTAGCACAGGAAAGCTTTATGAATTTTCAAGCAC AAGCATGGAACACACACTTTCAAGATATGGCAGTGGCCTGGATTTGGATTATAATGACCATCCTTCTGATGACCATGGGGCAGAGCATTCAAATAGTGCA GAGGTTAATGCAGTGAAAGATGAACTCTCAAAGTTACGGTTGACATGCTTGCAGATGATGGGTCAACAACTTGATGGCTTGAGTTTCAAGGAGCTGCAAC ACCTAGAACATCAATTAAGTGCAGGCATTCTGTCTGTTAAGGACAAGAAGGAACAAATGCTGATGGATCAGCTTAAGAAATCCAAAATGCAGGAGCAAAA GGCCACTCTAGAGAACGAATCTCTGCGTAAACAGATTGAGGAACTCAAACGAGGATCCCGGCCAAAGTCTGCTTTCCTGGAATTAAGTCCTTTGGACAGG AGATTTGCCGTAGCAAGTTCGAAACCTGATAGTAATCGCAAACCACAGGAAGAAGAAGATCTTTCCGACACTTCATTGCACTTGGGGTTGTCATCTGATG TTTGTCACAAGAGGAAAGCTGACAAGATTGAATCTGTCTCCAATGATTCAGGAAGTCAGGTGGCTTCAGGGTGA
AA sequence Show only first row Show all	>Potri.006G048700.1 pacid=42768652 polypeptide=Potri.006G048700.1.p locus=Potri.006G048700 ID=Potri.006G048700.1.v4.1 annot-version=v4.1 MTEERKKMGRGKIEIKRIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIVFSSTGKLYEFSSTSMEHTLSRYGSGLDLDYNDHPSDDHGAEHSNSA EVNAVKDELSKLRLTCLQMMGQQLDGLSFKELQHLEHQLSAGILSVKDKKEQMLMDQLKKSKMQEQKATLENESLRKQIEELKRGSRPKSAFLELSPLDR RFAVASSKPDSNRKPQEEEDLSDTSLHLGLSSDVCHKRKADKIESVSNDSGSQVASG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57390	MADS	AGL18	AGAMOUS-like 18 (.1.2)		Potri.006G048700 [exp]	0	1	AGL15.2
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106600 [exp]	6.32	0.9277	COMT4,Pt-RCOMT1.6
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.003G041600 [exp]	8.71	0.9116
AT1G47670			Transmembrane amino acid trans...		Potri.002G012900 [exp]	12.48	0.8933	PTRLHT10
AT2G24600			Ankyrin repeat family protein ...		Potri.014G050532 [exp]	14.56	0.9024
AT5G16740			Transmembrane amino acid trans...		Potri.002G233200 [exp]	14.83	0.8374
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G134701 [exp]	14.96	0.8873
AT4G03170	B3		AP2/B3-like transcriptional fa...		Potri.001G397100 [exp]	20.00	0.8609
					Potri.001G004900 [exp]	20.34	0.8922
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027000 [exp]	21.16	0.8928
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.011G004000 [exp]	24.18	0.8283

Compare expression of checked genes

Potri.006G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.