Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41660 241 / 2e-79 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT3G25640 197 / 1e-62 Protein of unknown function, DUF617 (.1) AT5G23100 189 / 6e-59 Protein of unknown function, DUF617 (.1) AT2G21990 178 / 2e-55 Protein of unknown function, DUF617 (.1) AT5G06990 178 / 3e-55 Protein of unknown function, DUF617 (.1) AT4G39610 178 / 3e-55 Protein of unknown function, DUF617 (.1) AT1G21050 164 / 1e-49 Protein of unknown function, DUF617 (.1) AT2G37880 157 / 2e-47 Protein of unknown function, DUF617 (.1) AT5G42680 151 / 8e-45 Protein of unknown function, DUF617 (.1.2) AT1G76610 147 / 2e-43 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056800 [exp] 468 / 4e-169 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 205 / 8e-66 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 202 / 1e-64 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 198 / 4e-63 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 194 / 3e-61 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 192 / 2e-60 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 189 / 1e-59 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 181 / 1e-56 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 173 / 2e-53 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035443 [exp] 245 / 2e-80 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 243 / 8e-80 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 192 / 1e-60 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 192 / 7e-60 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 191 / 9e-60 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 187 / 2e-58 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 187 / 3e-58 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 187 / 8e-58 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10042046 [exp] 176 / 9e-54 AT2G41660 170 / 3e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 173 / 4e-53 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [poplar] [flax] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Potri.006G048800.1 pacid=42768231 polypeptide=Potri.006G048800.1.p locus=Potri.006G048800 ID=Potri.006G048800.1.v4.1 annot-version=v4.1 ATGAAACACCAACAGATTACCCTTCAAAGAAGCAGTAGCTGTAGCAGAAGCACAAGAAAAATAATCCCATCTAACTACATGAGATCAATCCCTGAACAAG AAGATCATCACTCTCCACTCTCTTCACAACGCCTTGATGATACCAAAATCTATTCAAGATTCACTTGTTTCTTTCGTTCAATCCTCAAGATTATATCTTT CCCCAATATAATCATCCCCAAAACCTGTAAATGGCTATCAACCCCAACCCAGTACCTCTCCTTAACCCCTTCTCTTGGCCGGAAAGTCACCGGAACCCTC TTCGGAAACCGCCATGGTCATGTCAGCTTCGCAGTCCAGGATGATCCTGGCTCTGAACCGGTCCTTTTACTCGAGCTTTCGATTTCTACGGCAATGTTAG TTAAGGAAATGTCATCGGGTTTGGTCAGGATCGCCCTGGAATGCGAGAAGGTTCGTGCTCCTCAGGTTCAGACAGGCCGGCCAGGGAAGCTGTTTAATGA ACCCACATGGACTATGTATTGTAATGGAAGGAAGTGTGGATACGCCGTGTCGAGGAGGTGCACATATTCTGATTGGTACGTGCTTGGAACTGTGCAGAGT GTTTCAGTCGGTGCTGGGGTGATTCCGGTGGTGGAGGATGGGCGGAAGAGCGGTGGTGGGGAAGGTGAGTTGCTGTATATGAGGGCTAAGTTCGAGCGAG TTGTAGGGAGCCGTGACTCAGAGGCGTTTTATATGATGAATCCTGAAGGAAATGGAGGGCCTGAACTCAGTATATTTTTACTTAGAATATGA
AA sequence Show only first row Show all	>Potri.006G048800.1 pacid=42768231 polypeptide=Potri.006G048800.1.p locus=Potri.006G048800 ID=Potri.006G048800.1.v4.1 annot-version=v4.1 MKHQQITLQRSSSCSRSTRKIIPSNYMRSIPEQEDHHSPLSSQRLDDTKIYSRFTCFFRSILKIISFPNIIIPKTCKWLSTPTQYLSLTPSLGRKVTGTL FGNRHGHVSFAVQDDPGSEPVLLLELSISTAMLVKEMSSGLVRIALECEKVRAPQVQTGRPGKLFNEPTWTMYCNGRKCGYAVSRRCTYSDWYVLGTVQS VSVGAGVIPVVEDGRKSGGGEGELLYMRAKFERVVGSRDSEAFYMMNPEGNGGPELSIFLLRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.006G048800 [exp]	0	1
AT1G51940			protein kinase family protein ...		Potri.015G081601 [exp]	20.44	0.8206
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.016G056800 [exp]	21.77	0.8148
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.006G238500 [exp]	24.65	0.8059
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.014G002500 [exp]	34.05	0.8046
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006750 [exp]	40.49	0.7926
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177501 [exp]	55.58	0.7864
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006901 [exp]	56.24	0.7878
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G010300 [exp]	56.85	0.7784
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	60.37	0.7223
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166666 [exp]	63.87	0.7854

Compare expression of checked genes

Potri.006G048800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.