Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41670 559 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10650 236 / 2e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 106 / 1e-25 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT3G07050 53 / 2e-07 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 50 / 1e-06 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083100 [exp] 242 / 5e-77 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 102 / 4e-24 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.002G241100 [exp] 52 / 5e-07 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 48 / 9e-06 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031060 [exp] 622 / 0 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006578 [exp] 230 / 1e-72 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014654 [exp] 211 / 3e-65 AT4G10650 383 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006927 [exp] 102 / 3e-24 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 101 / 4e-23 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10028574 [exp] 55 / 7e-08 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 54 / 9e-08 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.006G048900.1 pacid=42768070 polypeptide=Potri.006G048900.1.p locus=Potri.006G048900 ID=Potri.006G048900.1.v4.1 annot-version=v4.1 ATGCGTTCAGGGTTAAAGGGAATAGTAAAGAAAGGAATAGGAGAGATGGGTTTCAACGCAGGTGGTGGAGCCATTAACTGGTTCCCTGGCCACATGGCTG CTGCCACCCGCGCCATCCGAGACCGCCTGAAACTTGCCGACCTAGTCATAGAAGTCCGTGACTCTCGTATTCCATTATCGTCAACAAATGAAGACTTACA ACCTCAACTTGCTGCAAAAAGACGTGTTATTGCTCTTAATAAGAAGGATTTGGCTAATCCTAATATTATGCATAAATGGATTCGTTATTTTGACTCGTGC AAGCAAGATTGCATTCCGATAAGTGCACACAGCAAGAGTTCTGTTCAGAAGCTTCTTGAAGTTGTGGAGTTCAAACTCAAGGAGGTGATATCGAGGGAAC CTACTCTCCTTGTTATGGTGGTTGGTGTTCCTAATGTTGGGAAATCAGCTTTGATAAACTCAATCCATCAAATTGCATTGTCTCGCTTTGCTGTGCAGGG GAAAAAGAAACGAGCTACAGTGGGCCCTTTGCCTGGTGTAACTCAAGATATTGCAGGATACAAGATTGCTCATAAGCCTAGCATATACGTGCTGGACACC CCGGGCGTGTTGGTTCCCAGTATCCCAGATATTGAAACAGGATTAAAGTTATCTCTTGCAGGATCTGTGAAAGATTCTGTTGTAGGTGAGGAGCGTATTG CCCGATACTTACTAGCAGTTTTAAATACTCGAGGCACTCCACTTCACTGGAAACACTGGAATAACAGAAAAATGGATGGGATTCGATATGAATCTGAGGA AAAACACAAATATGATCCTAAAGATCTTCGGCCAAATATGAGGAAGCCACCTAGTGTGTCTGATGTGGTGTATGTTGAGAATCTTGTCACAGAAGTCCAA TGTGCAATGTACAAAACACTGGCAGAATTCAATGGTAATGTGGAGGATGAGAATGATTTGGAGAATCTTATAGAGCAACAATTTGAGGTGCTGCAGAAGG CACTGAAGATACCTCATAAGGCATCCGAAGCTCGCTTGATGGTATCAAAGAAGTTTCTCACTCTTTTTAGGACAGGTAAACTTGGTTGTTTCATCCTTGA TGATGTCCCTGAGACCAACACTGTATCATAA
AA sequence Show only first row Show all	>Potri.006G048900.1 pacid=42768070 polypeptide=Potri.006G048900.1.p locus=Potri.006G048900 ID=Potri.006G048900.1.v4.1 annot-version=v4.1 MRSGLKGIVKKGIGEMGFNAGGGAINWFPGHMAAATRAIRDRLKLADLVIEVRDSRIPLSSTNEDLQPQLAAKRRVIALNKKDLANPNIMHKWIRYFDSC KQDCIPISAHSKSSVQKLLEVVEFKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFAVQGKKKRATVGPLPGVTQDIAGYKIAHKPSIYVLDT PGVLVPSIPDIETGLKLSLAGSVKDSVVGEERIARYLLAVLNTRGTPLHWKHWNNRKMDGIRYESEEKHKYDPKDLRPNMRKPPSVSDVVYVENLVTEVQ CAMYKTLAEFNGNVEDENDLENLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGKLGCFILDDVPETNTVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41670			P-loop containing nucleoside t...		Potri.006G048900 [exp]	0	1
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Potri.013G123700 [exp]	23.87	0.6807
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.004G199100 [exp]	24.57	0.6801
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.018G114900 [exp]	25.78	0.6748
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.011G089000 [exp]	26.45	0.6766
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	31.87	0.6740
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075800 [exp]	34.92	0.5911	ATUBA1.3
AT2G47790			Transducin/WD40 repeat-like su...		Potri.014G130600 [exp]	41.10	0.6618
AT4G39300			unknown protein		Potri.004G154800 [exp]	51.26	0.6519
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.001G440100 [exp]	55.29	0.6541
AT3G28720			unknown protein		Potri.017G078700 [exp]	55.85	0.6279

Compare expression of checked genes

Potri.006G048900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.