Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 58 / 3e-11 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 56 / 2e-10 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 54 / 9e-10 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G01320 50 / 3e-08 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT1G17840 45 / 1e-06 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 42 / 1e-05 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT1G71960 42 / 1e-05 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G52310 42 / 1e-05 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G53390 41 / 3e-05 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37010 40 / 5e-05 ATNAP12 non-intrinsic ABC protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056600 [exp] 73 / 1e-16 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 56 / 2e-10 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 56 / 2e-10 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 54 / 1e-09 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 54 / 1e-09 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.010G115000 [exp] 53 / 2e-09 AT2G01320 1047 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Potri.001G255800 [exp] 52 / 6e-09 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.005G073100 [exp] 49 / 6e-08 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 49 / 7e-08 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009960 [exp] 58 / 4e-11 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 57 / 7e-11 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 54 / 1e-09 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10000338 [exp] 52 / 5e-09 AT3G21090 532 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 52 / 5e-09 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 52 / 6e-09 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 50 / 2e-08 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 49 / 4e-08 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10042949 [exp] 49 / 4e-08 AT2G01320 1062 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Lus10032449 [exp] 49 / 5e-08 AT2G01320 1037 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13555 [poplar] [flax] AAA_29 P-loop containing region of AAA domain
Representative CDS sequence Show only first row Show all	>Potri.006G049000.2 pacid=42770170 polypeptide=Potri.006G049000.2.p locus=Potri.006G049000 ID=Potri.006G049000.2.v4.1 annot-version=v4.1 ATGAAGATTCAAGAGAGGGAGAAGGAAGAGCAGTCGGAGTCCAGTAGTATTAGAGAAAAGAAAGCAATGCATACATCTGATATGGGAAGATGGAACCGTA GTACTGGTGGCTATCAACTTGAAAAGAAAAGTGGTGGTGCGCCTAGGAAGTTGCTAAATAGGCAAGGTGGTTATGCTGTACCTGATCGGATCACGGCCAT TATGGGTCCTTCTGGCTCAGGCAAATCCACCTTACTTGATGCATTTGCAGGTGTTTTAGTGAACTCAAATATTACTGTTCTTCACCGTTAA
AA sequence Show only first row Show all	>Potri.006G049000.2 pacid=42770170 polypeptide=Potri.006G049000.2.p locus=Potri.006G049000 ID=Potri.006G049000.2.v4.1 annot-version=v4.1 MKIQEREKEEQSESSSIREKKAMHTSDMGRWNRSTGGYQLEKKSGGAPRKLLNRQGGYAVPDRITAIMGPSGSGKSTLLDAFAGVLVNSNITVLHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.006G049000 [exp]	0	1
AT2G31470		DOR	DROUGHT TOLERANCE REPRESSOR, F...		Potri.001G458400 [exp]	3.31	0.8702
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	4.89	0.8700
AT3G04880		DRT102	DNA-DAMAGE-REPAIR/TOLERATION 2...		Potri.005G050600 [exp]	8.71	0.8541	Pt-DRT102.2
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	10.95	0.8916
AT1G24290			AAA-type ATPase family protein...		Potri.011G023800 [exp]	12.04	0.8366
					Potri.009G016766 [exp]	12.96	0.8867
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.001G269200 [exp]	13.74	0.8519
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.006G231300 [exp]	15.49	0.8717
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	15.87	0.8822
AT1G78160		APUM7	pumilio 7 (.1)		Potri.002G095400 [exp]	17.49	0.8109

Compare expression of checked genes

Potri.006G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.