Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41680 785 / 0 NTRC NADPH-dependent thioredoxin reductase C (.1) AT2G17420 314 / 3e-103 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 307 / 2e-100 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT3G15360 41 / 0.0006 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456800 [exp] 318 / 1e-104 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 313 / 5e-103 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.003G178200 [exp] 52 / 6e-07 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.019G111200 [exp] 43 / 0.0002 AT4G03520 172 / 9e-55 Thioredoxin superfamily protein (.1.2) Potri.011G120700 [exp] 41 / 0.0007 AT3G15360 190 / 1e-61 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018051 [exp] 805 / 0 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10042048 [exp] 801 / 0 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10006853 [exp] 310 / 2e-96 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10025845 [exp] 271 / 9e-88 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038256 [exp] 253 / 4e-81 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10037596 [exp] 130 / 7e-36 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10019550 [exp] 116 / 1e-30 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038255 [exp] 53 / 2e-08 ND 115 / 7e-32 Lus10028763 [exp] 43 / 0.0004 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.006G049100.1 pacid=42769266 polypeptide=Potri.006G049100.1.p locus=Potri.006G049100 ID=Potri.006G049100.1.v4.1 annot-version=v4.1 ATGACAACCACCGCCGCCGCCACTCTTTCGCTTCCTTCCCACTCTCTTATATTCATAAAGAGTACTCCTTTTCCTTCCCTCCGTCGCTCTTTCTGTCTCA ACTCGCCCTCTACACCAACTCCCACCTCTCATTCTCCTCTCCGTGTCAAAGCTTCCTCTGCTGAGCCCTCTCCTTCTCCAGGCAAAGGTATTGAGAATGT GGTAATTATAGGTTCAGGTCCTGCTGGATACACAGCAGCAATATATGCTGCTCGTGCCAATTTGAAGCCTGTAGTGTTTGAGGGGTATCAAGTTGGTGGT GTGCCTGGTGGGCAGTTGATGACTACCACTGAAGTGGAGAACTTCCCAGGGTTTCCTGATGGAATAACCGGTCCGGATTTGATGGATAGGATGCGACGGC AAGCTGAACGTTGGGGGGCAGAACTGTTCCAAGAAGATGTGGAATCTCTTGATGTTAAAAGCAGTCCTTTCACCGTGAAGAGTAGTGAACGTAAGGTTAA GTGCCACAGCATCATTTATGCCACAGGAGCTACTGCCAGAAGACTCAAATTACCCCGTGAAGATGAATTTTGGAGTAGGGGAATTAGTGCTTGTGCAATT TGTGATGGAGCATCACCACTTTTTAAAAGGCAAGTTCTTGCTGTCGTAGGGGGAGGTGATACAGCCACAGAGGAAGCATTGTACTTAACTAAATATGCTC GTCATGTCCATTTACTTGTACGCAAGGATCAACTTAGGGCATCTAAAGCAATGCAAGATAGAGTGATCAACAATCCAAATGTCACCGTGCACTTCAATAC AGAGACTCTAGATATCGTTAGCAATACAAAGGGCCAGATGTCTGGTATTTTGACTAGAAAAACTGATACCGGGGAGGAATCCGTGCTTGAGGCAAAAGGC TTGTTCTATGGTATTGGTCATTCTCCGAATAGCCAGCTGTTGGAAGGCCAAGTTGAACTTGATAGTGCAGGCTATGTGTTAGTTCAGGATGGTTCTGGGA AAACTTCTGTTGAAGGTGTATTTGCTGCTGGAGATGTTCAGGACCATGAGTGGAGGCAAGCCATAACAGCCGCTGGATCTGGATGTATTGCTGCTCTATC AGTTGAGAGATACCTTGTGAGCAACAACCTACTTATAGAGTTTCACCAGCGTCAAACTGAAGAGGTTAAGAAGGAACTCACTGACAGAGATGTTCACGAG GGCTTTGACATTACCATCACAAAGCATAAGGGCCAGTATTCTCTGCGAAAGTTGTATCATGAAAGTCCACGGCTTATATGTGTGCTATATACATCACCAA CTTGTGGTCCATGTAGGACATTGAAGCCAATTCTCAGCAAGGTGATTGATGAGTTTGATCAGAATGTCCATTTTGTCGAAATTGATATCGAGGAGGATCC AGAGATAGCAGAAGCAGCTGGAATTATGGGCACACCATGTGTGCAGTTCTTCAAGAACAAGGAGATGATCAGGACTGTATCAGGGGTCAAAATGAAGAAA GAGTACAAAGAGTTCATTGAAGAAAATAAATGA
AA sequence Show only first row Show all	>Potri.006G049100.1 pacid=42769266 polypeptide=Potri.006G049100.1.p locus=Potri.006G049100 ID=Potri.006G049100.1.v4.1 annot-version=v4.1 MTTTAAATLSLPSHSLIFIKSTPFPSLRRSFCLNSPSTPTPTSHSPLRVKASSAEPSPSPGKGIENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGG VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELFQEDVESLDVKSSPFTVKSSERKVKCHSIIYATGATARRLKLPREDEFWSRGISACAI CDGASPLFKRQVLAVVGGGDTATEEALYLTKYARHVHLLVRKDQLRASKAMQDRVINNPNVTVHFNTETLDIVSNTKGQMSGILTRKTDTGEESVLEAKG LFYGIGHSPNSQLLEGQVELDSAGYVLVQDGSGKTSVEGVFAAGDVQDHEWRQAITAAGSGCIAALSVERYLVSNNLLIEFHQRQTEEVKKELTDRDVHE GFDITITKHKGQYSLRKLYHESPRLICVLYTSPTCGPCRTLKPILSKVIDEFDQNVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVSGVKMKK EYKEFIEENK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Potri.006G049100 [exp]	0	1
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.010G193300 [exp]	2.00	0.9756
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.010G065600 [exp]	2.44	0.9715	RNP1.1
AT4G37040		MAP1D	methionine aminopeptidase 1D (...		Potri.005G137400 [exp]	3.46	0.9689	MAP1.2
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.010G170300 [exp]	4.89	0.9483
AT5G27290			unknown protein		Potri.013G029000 [exp]	6.92	0.9548
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	8.94	0.9677
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	10.72	0.9674
AT5G16650			Chaperone DnaJ-domain superfam...		Potri.019G041400 [exp]	11.13	0.9463
AT1G60230			Radical SAM superfamily protei...		Potri.010G040700 [exp]	12.96	0.9623
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	13.22	0.9600	FBP.1

Compare expression of checked genes

Potri.006G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.