Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79540 787 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 266 / 2e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 267 / 1e-77 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 266 / 3e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 263 / 3e-77 RPF2 rna processing factor 2 (.1) AT5G39710 265 / 9e-77 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 259 / 5e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 257 / 5e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 253 / 9e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 253 / 2e-73 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 283 / 4e-84 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 283 / 8e-84 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 278 / 2e-82 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 275 / 5e-82 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 275 / 7e-82 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 271 / 2e-80 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 269 / 9e-80 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074700 [exp] 265 / 4e-79 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 267 / 5e-79 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020852 [exp] 791 / 0 AT1G79540 665 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033522 [exp] 780 / 0 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 262 / 8e-76 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 265 / 3e-75 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 259 / 1e-74 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 258 / 3e-74 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 261 / 1e-73 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 256 / 1e-73 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 255 / 4e-73 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 255 / 1e-72 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G049400.1 pacid=42770347 polypeptide=Potri.006G049400.1.p locus=Potri.006G049400 ID=Potri.006G049400.1.v4.1 annot-version=v4.1 ATGAACCTCAACTCTCTACTGTTCATGAAACCCCACTCTCTACTGCAACGCCATTTCTCTCATCCAAAACCGCCATGGGTTCAATCCCTCCACACCTCAG CCATACAAGAAACTTCTATTTCCGATGAAGTATTCACCGTTATTAAAACTATGAACCCAATGGAGCCAGCTTTAGAACCCATGGTCCCGTTTCTCTCACC AAAAATTGTTACCTCTATAATCCAAAACCCACCAAACCCTCAACTGGGTTTTCGTTTCTTTATCTGGGCATCAAATTTCAAGCGTTTTCGTGCATGGGAA TCTTGTGATTTAATCACTGACTTGCTCATTAACCAAAACGGGCTTGAGTTGTACTGTCAAACACTTGAAGCTCTTAAAAATGGTGGCATAAAGGTGCATA ACGATGCATTTTTTGTGTTGATTAAAGTGTATTTGAAGATGGGTTTGACTGATAAAGCTATGGAAACTTTTGGGTCAATGAGGGATTTTGATTGCACGCC TGATGTTTACACTTATAACATGATTTTGGATGTTTTGATTCAAAAGAATTTTCTTTTATTAGCTTTAACTGTTTATACTAGAATGATGAAGTTGAATTGT TTGCCGAATGTAGCTACATTTAGTATCTTGATTGATGGGTTGTGTAAGAGTGGCAATGTAAAGGATGCACTTCACTTGTTTGATGAAATGACACAAAGAG GTATTTTGCCTGACGCCTTTACGTATTGTGTTGTTATTTCCGGGTTGTGTAGATCCAAGAGGGTTGATGATGCTTATAGATTGTTTGATAAGATGAAAGA TAGTGGGGTCGGTCCTGATTTTGTTACTTGCAATGCTTTGCTTAATGGGTTTTGTATGTTAGATAGAGTTGATGAGGCCTTTTCTCTGTTAAGGTTGTTC GAGAAGGACGGATATGTGCTTGATGTGCGCGGGTACAGTTGTTTGATTCGTGGGTTGTTTAGAGCCAAGAGATATGAAGATGTGCAACTGTTGTATAGGA AAATGATCGAGGATAATGTCAAGCCTGATGTTTACTTGTATACAATAATGATGAAAGGGTTAGCAGAAGCAGGGAAGGTTAGGGATGCGTTGGAGTTGTT GAATGAGATGACAGAGAGTGGTGTGGTTCCTGATACTGTTTGTTATAACGTTTTGATCAAAGGTTTCTGTGATATGGGTCTTTTGAGTGAGGCTCGGTCA CTACAACTTGAGATTTCTAGGCACGATTGCTTCCCTAATGTTAAAACTTACTCCATTCTCATTAGTGGTATGTGTAGAAATGGTCTTACCAGGGATGCCC AAGAAATATTCAATGAGATGGAGAAGCTTGGATGTTATCCTTCTGCAGTTACATTCAATTCCCTTATTGATGGACTTTGTAAAACTGGCCAGCTCGAGAA AGCTCACCTTCTGTTTTATAAGATGGAGATAGGGAGAAATCCTTCTCTGTTTCTTCGTCTTTCTCAGGGGCCCAGTCATGTTCTTGATTCAGCAAGCCTA CAAAAAATGGTGGAGCAATTGTGTGACTCAGGCTTGATTCATAAGGCCTACAGGATTCTCATGCAACTTGCTGACAGCGGGGATGCACCAGGCATTTATA CTTATAACATTCTGGTCAATGGTTTTTGCAAGTTAGGCAACTTTAATGGTGCTTATAAACTCTTCAGGGAAATGCAATTCAAGGGGCTCTCACCTGATAC TGTTACGTATGGAACTCTTATCAATGGGCTTCTACGGTTTCAACGCGAAGAGGATGCCTACAAGGTCTTTGACCAGATGGAGAAGAATGGATGTACACCT GATGCTGCAGTTTATAGAACAATGATGACTTGGATGTGCAGGAGAATGGAGTTGCCACGAGCTTTTAGTCTCTGGTTGAAGTATCTCAGGAACATTCGTA GCCAGGAAGATGAAGCAATTAAAGCTATAGAAGGATACTTTGAGAAGCAAGAAGTGGAAAAGGCTGTTCGAGGCTTGCTTGAGATGGACTTCAAGTTAAA TGATTTTGATTTAGGTCCATATGCTATTTGGCTAATTGGGCTGTGTCAAACAAGAAGGGTAGGTGAAGCTTTGAAGATATTCTTAATCCTTGAAGAGTAC AAAGTTGTTATTACACCCCCTTGTTGTGTGAAATTGATATATTTTCTATTGAAAGAAGGGGATCTAGACCGTGCAATTGATGTTTTCCTTTACACCATCG AGAAAGGCTACCTGTTGAGACGACGGGTTGCCAATCGAATACTGACAAAACTTGTCCGTAGAAAGGGTGAAATGGGAAAGGATCGTGCCATTTATCTTCT ATGCAGAATGAAATCCGTGGGATATGATTTGGATGCTCACCTTCTCCCTTGGACGAAGTCCCTTTTACATCGACATAATATACAGGAAATGGTAAACGGT GTCCCTGAGATGAACTCTGGATGCGTGGAAATGCAAAACAGCTATGGTAGAGTTGGGCAACCATGGAAGCCTACAGTCAAACAACGGAGAAAAATGTTTC AACTGGCACGAAGAAAATATGCCGGAATGAAAAACAGCTGA
AA sequence Show only first row Show all	>Potri.006G049400.1 pacid=42770347 polypeptide=Potri.006G049400.1.p locus=Potri.006G049400 ID=Potri.006G049400.1.v4.1 annot-version=v4.1 MNLNSLLFMKPHSLLQRHFSHPKPPWVQSLHTSAIQETSISDEVFTVIKTMNPMEPALEPMVPFLSPKIVTSIIQNPPNPQLGFRFFIWASNFKRFRAWE SCDLITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNC LPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLF EKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARS LQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASL QKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTP DAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEY KVVITPPCCVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRVANRILTKLVRRKGEMGKDRAIYLLCRMKSVGYDLDAHLLPWTKSLLHRHNIQEMVNG VPEMNSGCVEMQNSYGRVGQPWKPTVKQRRKMFQLARRKYAGMKNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79540			Pentatricopeptide repeat (PPR)...		Potri.006G049400 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	7.93	0.9017
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	9.27	0.8998
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	15.87	0.8955
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	16.43	0.8918
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	16.97	0.8948
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	19.62	0.8891
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	20.00	0.8948
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	22.64	0.8795
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	23.68	0.8672
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	24.65	0.8864

Compare expression of checked genes

Potri.006G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.