Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41720 1170 / 0 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 238 / 5e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 238 / 9e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 222 / 8e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 218 / 1e-59 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G01110 216 / 1e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 202 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 201 / 7e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 199 / 3e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 200 / 4e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069100 [exp] 233 / 9e-65 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.009G092100 [exp] 231 / 2e-64 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 227 / 1e-63 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 226 / 1e-62 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 222 / 3e-62 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 214 / 6e-58 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 208 / 1e-57 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 207 / 1e-57 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 212 / 5e-57 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042068 [exp] 1192 / 0 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018075 [exp] 1156 / 0 AT2G41720 1020 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033127 [exp] 244 / 1e-68 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10002107 [exp] 209 / 5e-57 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 210 / 1e-56 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 205 / 8e-56 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 207 / 2e-55 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10014245 [exp] 199 / 2e-54 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027916 [exp] 200 / 6e-54 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 200 / 7e-54 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.006G049900.1 pacid=42767796 polypeptide=Potri.006G049900.1.p locus=Potri.006G049900 ID=Potri.006G049900.1.v4.1 annot-version=v4.1 ATGGCAACCATACACCATCACCACCTCCCGCTCCTCCACAACCCAACACCACCAGCCTTCAAACCCAAAATACTATGCAAGAATTCCAAAAACGACGCAG CATTCGAGGAGAAAAAGTCTGGGTTCGTGGACTACGACAAGGGCATACACCATGTGTCCACTCAAGTGAGTGGAATCAGGAAAGACCAGATTCCTCAACG CTATCGTATACGAGTCCAAGGAGACAGGTTCCAGAAGGACTGGTCTGTTTCTCAGGTTGTCCAGAAAGTTCTTGAACTCGATCACAAGTCTGATGATGTT GAAGGTCTCTTGAACCGGTGGGTTGGCCGGTTTGCTCGTAAGAATTTCCCTCTTCTTATCAAGGAGATAACGCAGAAGGGTTCAATTGAACACAGCATTT TGGTTTTTCGGTGGATGAAGAATCAGAGGAACTACTGTGCTCGTACAGATATTTATAATATGATGATTAGGCTGCATGCTAGGCATAATTGGACTGATCA AGCTCGTGGGTTGTTTTTCGAGATGCAAAAATGGAGGTGCAAACCAGATGCTGAGACTTGCAATGCTCTTATCAATGCGCATGGTAGATCAGGTCAATGG CGTTGGGCTATGAATATAATGGAAGACATGCTGCAGAAAGCTATTCCTCCCAGTCGGTCGACATATAATAACTTGATCAATGCTTGTGGATCTAGTGGAA ACTGGAGAGAAGCTCTGAAGCTCTGTAAGAAAATGACTGAAAATGGAGTTGGACCTGATCTGGTGACTCACAATATTATTTTATCTGCATATAAGACTGG TGCCCAGTATGCAAAAGCTCTATCTTATTTTGAACTAATGAAAGGTACAAATATCCGTCCTGACACAACAACCCTTAACATCATTATATATTGCTTAACA AAGCTTGGTCAATATGAGAAAGCCATTGGTATTTTCAAGTCCATGAGGGAGAAGAGAGCAGAGTGCCACCCTGACGTTGTAACATTTACAAGCATCATCC ACTTATACTCTGTGAATGGGCAGATAGAAAACTGTAGGGCCGTGTTTAGTACCATGGTTGCAGAAGGTCTCAAGCCTAACATTGTTTCCTATAATACACT CATGGGAGCATATGCTTCTCATGGGATGAATAAAGAGGCATTATCAGTTTTCAATGCAATTAAAAATAGTGGACTTCGTCCAGATGTTGTATCGTATACA TCTTTGCTAAACTCTTATGGAAGATCACAACAACCTAAAAAGGCAAGAGAAGTATTTGAGATGATGAAGAGAGACAAGTTGAAGCCAAATATTGTCAGCT ACAATGCAATGATTGATGCCTATGGATCTAATGGTTTGCTTGCTGAAGCTGTGGAAGTTTTGCGTGAAATGGAACAAGATGGAATCTATCCAAATGCTGT CTCAATATGCACTCTTTTGGCAGCTTGTGGCCGCTGTTCTAGGAAGGTGAATATTGATGTTGTGCTTCAAGCAGCTGAAAGGCGACACATTAAATTGAAC ACAATTGCATATAATTCAGCTATTGGAAGCTATATGAATGTGGGAGAGTTTGAAAAGGCTACTTCTATGTACAGATCCATGAGAAAAAGTAAAGTGATTC CTGACGCTGTTACTTTCACAGTCTTAATAAGTGGTTGCTGCAAAATGACAAAATATTGTGAGGCACTTGAGTTTCTTTCTGAAATGATGGACTTGAAGAT TCCTATGACCAAGGAAGCTTACTCTTCTGTGATCTGTGCCTACAGCAAGCAGGGTAAAATCACAGAAGCAGAATCTATGTTCAACAAGATGAAGATGGCT GGCTGTAGTCCTGATGTTGTTACCTATACCATGATGCTACATGCTTATAATGCAGCAGAACACTGGAAAAAGGCTTGTGCTCTTCTTCAAGAAATGGAAG AGTATAATATCCAACCAGACACTATTGCATGTTCGGCTCTGATGAGAGCTTTCAATAAGGGAGGTGATCCATCGAAGGTTCTCATTCTTGCAGAGTTTAT GAGAGAGAAAGAAATCCCCTTAAGCGATGCTATTTTCTTTGAGATGGTATCAGCCTGTAGCCTATTACGAGATTGGAGAACAACGATTGAGTTAATTAAA TTGATGGAGTCTTCATTCTCTGTTGTTTCAATTGGACTTCTGAACCAGCTTCTGCATCTTCTGGGGAAAAGTGGAAAAATTGAATCTATGATGAAGTTGT TTTACAAGATTATAGGATCAGGTGCTGAAATCAACTGCAACACTTACTCGATCTTGTTGAAGAATCTTTTGGCTGTTGGAAATTGGAGGAAATATATTGA GGTATTGGAATGGATGGAGGAAGCCAGAGTTCAGCCTTCAAATGGAATGTATTTTGACATAATCTCCTTTGCACAGAAAAGTGGAGCCACTTATTCTTCT ATCATACAGGAAAGAGTTGAATCGTTGAGAAGAAAATCTGGGAATGAAGTCTCGACAAGCAAGGTGTGA
AA sequence Show only first row Show all	>Potri.006G049900.1 pacid=42767796 polypeptide=Potri.006G049900.1.p locus=Potri.006G049900 ID=Potri.006G049900.1.v4.1 annot-version=v4.1 MATIHHHHLPLLHNPTPPAFKPKILCKNSKNDAAFEEKKSGFVDYDKGIHHVSTQVSGIRKDQIPQRYRIRVQGDRFQKDWSVSQVVQKVLELDHKSDDV EGLLNRWVGRFARKNFPLLIKEITQKGSIEHSILVFRWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQW RWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLT KLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYT SLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLN TIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSVICAYSKQGKITEAESMFNKMKMA GCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIK LMESSFSVVSIGLLNQLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIEVLEWMEEARVQPSNGMYFDIISFAQKSGATYSS IIQERVESLRRKSGNEVSTSKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	0	1
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	1.00	0.8323
					Potri.012G036400 [exp]	1.41	0.8317
AT3G15690			Single hybrid motif superfamil...		Potri.003G061400 [exp]	2.82	0.7805
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	8.48	0.7924
AT4G13590			Uncharacterized protein family...		Potri.003G174600 [exp]	9.79	0.8007
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.003G022701 [exp]	12.04	0.7395
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	12.24	0.7745
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	20.49	0.7539
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.014G117600 [exp]	21.16	0.7629
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Potri.014G049200 [exp]	23.36	0.7630

Compare expression of checked genes

Potri.006G049900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.