Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23540 928 / 0 ARM repeat superfamily protein (.1) AT2G34357 268 / 2e-73 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137900 [exp] 359 / 9e-105 AT2G34357 1301 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031065 [exp] 1070 / 0 AT4G23540 843 / 0.0 ARM repeat superfamily protein (.1) Lus10035446 [exp] 1038 / 0 AT4G23540 835 / 0.0 ARM repeat superfamily protein (.1) Lus10021944 [exp] 309 / 2e-87 AT2G34357 1194 / 0.0 ARM repeat superfamily protein (.1) Lus10041231 [exp] 176 / 2e-45 AT2G34357 683 / 0.0 ARM repeat superfamily protein (.1) Lus10041232 [exp] 103 / 2e-24 AT2G34357 293 / 1e-91 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G050000.2 pacid=42767689 polypeptide=Potri.006G050000.2.p locus=Potri.006G050000 ID=Potri.006G050000.2.v4.1 annot-version=v4.1 ATGAAACATAAAAAACCCGAACCCGAACCTGAAACCCAATTGAAAAACGACACAGAAATCTGCCAACAACTACTCTCCCGATACTCCGCCTCTACAGCAC CACAGCACCGCCACCTCTTGGCAACTGCCGCCGCACTCCGATCCATCCTTACCGCCGAATCACTTCCTTTAACTCCCTCAGCTTACTTCGCTGCCGCAAT CAACAATCTCTCCGATTCGAAAACTCTAGATTCCACGGCAATTGCGGCGTTACTTTCGTTTGTTTCGATTGTGGTGCCCTTGATTGAAGAGAAGGGGATT AAGGATGCCAAGGTGAAGGAGGCGGTGGCGGTGTTAGTGGAAGTTGCGGTGGAGAGAGAAGGAGTGGGAGTGGGGAGTTTGGGCTGTGTGGTGAAGTGCT TGGGGGTTATGATTTTAGGGTTTTGTGATTTGGAGGAGTGGGATTCTGTGAAAGCAGGGTTTGAAAGTTTGATTAAATTCTCCGTTGATAAGAGACCAAA GGTGAGGAGGAGTGCACAAGACTGTCTTGAGAAGGTTTTCAAGTCTTTTAGATCTTCTTCTGTTGTTAAGGAAGCTAGCAAATTGGTCTTTTCGTTGTTC AAAAATTACATGCCTGTAGCACTTACATTGAGTGAGTCAAGGATTTTTGATGAGTCTAAAGAAGAAACATTATCAAAGCTGGAACATCTAGAGGTCATTC ATATGCTAAATCTTCTGAAGGTTACTGTTCCATATCTCTCGGTTAAAATCAGTTCAAAAGTTTTGCCAGAACTAGTTAAGCTTTTGAGGTCTGATTTCTC AGTGCTGACGAGGCAGATTTTTCAAAATATTGAAGCATTTTTTGTGAGTTCAAGTGATGAAGTGATTGGTCCGCAACAGGAGAACATTATAGATTCTCTT TCTGGGTATTTATCTCTGGGACAGAAGAATCCTGTGGACACTGTATTGTCTGCCGCCACCCTGCTAAGAACTATTTTAAATAAACTTCAAGCCGGAGGAT CAAGCTCTTGGACGAGTAATGGACATAAAATTTTTGGTTCTACAGCAGGTCTTTTGACTGATGAGGCTACTGCATCACAGGCTTCAGATATAATGAAGGA GTTGATCAACCACTATATAGATCCAAAAGAAGTCGAGATTAATGAAAGTCAATCACTTGATGATTCAAGTCAAGAGAGTGAAGAAGCAAATATGATAAAA TCAACATGCGCTGTCTTGGAGAATATTCTGAATTCATGTGATGGAATTCCTAACGAACACCTTTTGGGAGTCATATCTGTTTTGTTCAAGAAGCTTGGAG ATATATCGCATATCTTCATGAAGAACATCGTACTTAAGCTTGCAGACTTGATGAATGATGCTGGTCGTGATAAACCAGACACAAATCATCTTCAAAATTG CATGGGATCTGCAGTGGTTGCCATTGGTCCGGAGAAGATGCTTATGCTCGTACCTATCTCCATTGATCCTGACAGTTTTACATGTTCAAATATCTGGTTG GTACCCATATTGAAAGACCATGTTGTTGGAGCTTCGCTAGGGTATTATATGGAGCACATCGTGCCTCTTGCAAAATCCTTTAAGCAAGCTGGTCAGAAAG TTAGAAAATCAGTAATTGGTCAGGATCTGCAGGCTCATGCTCATGGCCTCTGGGGACTGCTTCCTGCCTTTTGTCGCTATCCTGTCGATACTCACAAAAA GTTTGGAGCTTTGGCTGAACTTATGATTACTTCTCTTAAGAAGTATTCCTTCATGCATCAGAATATTGCTGTTGCCTTACAGGTTCTTGTGAATCAAAAC AGAAGTGTGATGTTGTCTAAAAGTGATGGTGGTGCCTCAAATGACAATGCAGTAAAAGATTCTGTTTTAGAGTGCCAAAATGTAGCCACTTATTCCAAAA AAACTGCAACCAAAAACATCAAAGCTTTGACATCATGTTCTTCAAAGTTGCTTCATGCTCTAGCTGACTTATTTGTTGATTCACAGTCTGGGAAGCCCTC GTATATAAAGGATGCTATTGCATGCTTGGCTTCTATCAGCAATTCTTCTGTCACCCAGAAAGTTTTCATGTCACTGCTTAAGAGGTTTCGGTTTGTAACT GGTGAAGGTGAGTTTCAACAGCCAAAGAGTGATGGTGATGAATTGATTGAGGAAGAAGCACGCAGCTTGAATGTACAAGAGAAAGATGTACATAGGTGTG TGATGATGGAGCTTGCATCTTCTCTCGTTGTTGGAGCCAAAACAGATTTCATTGATCTGATATATAACTTTGTTGTCTTCATCTTTCAGGCTACTGATGT AACTGGTCATTGTGAAGCATACCACACTCTGAGCAGAATTTTACAGGAACACGCATGGTTTTGTTCTTCTCGGTTTGTGGAGCTGATTGACTTATTACTT GGCCTGAAATCTCCTGATGATGTTGCAACTCTTAAAAATCGATTTGCTTGTTTCCATATTCTCATAGTTCATGCATTAGAGATGACCTCAGAGGAGAAAA ATACAAAGGCTTTTCTTATGCTCAATGAGATCATACTCATCTTGAAGGATGCAAGGGAAGAAGCTAGGAAAGTGGCTTATGATACACTCCTTTTTATAAG TTCCTCCTTGCGCAACTCATCTTGTGCCACTTCTAGAGAAGCTTATCAAAGACTGATCAGCATGATAACAGGCTATCTCTCTGGTTCGTCTCCCTACATA ACAAGTGGAGCAGTATCTGCACTGTCTGTACTAGTATATAATGATACAGAAATCTGTCTTAAAGTGCCCGATCTTGTTCCCTCTCTCTTATCATTGCTGC AAAACAAAGCTCTGGAAGTCATAAAAGCTGTTTTGGGCTTCACAAAAGTATTAGTATCTTGCTTGCAAGCAAAAGACCTGCAGAATTTCCTATCTGACAT CATCATTGGAGTTCTTCCCTGGTCATCTGTCTCTAGAAACCATTTCAGATCAAAGGTTACAGTCATACTGGAGATTATGATACGGAAGTGTGGTTCTTCT GCAGTTGAGTTAGATATCCCAGAGAAACATAAGAGTTTTTTCAAGACTGTTTTGCAGAATCGCCATCATAAGTCAACTTCCAAGGAAGCTGGCACAAATG ATACAGAAAAAACGCCTGCAGATATATCACCTAAGAGGGTGGAGAAGCCAAAGAACAAGGAATCGGGTTCTGTACCTGAGAGAACTGGTTCAGCGCATCC TGGGAAGAGAAAGAGGGAGAAGAAACACAATGAGAAGCCTCCCACCTCAAGCAAGCCTGGTATATCAACTGGTGATGGTAGCGGACGTGAAGGGGCTAAA AGAGCGAGGCACTTAGAGCATGAAAAATCAATCAAGGTTCGGTCAGAGGATGGTTGGAAGAAGAGGAATTTTAACAAAGAGCAAACTGGTGATGGGAAAA GAAAGATGGAGCATAGGAACACGAACAAGAAAGGCGAAGCGTCATTTCGTGGACCTAGTTCTGCTTCCAAATTACACAAACCCCAGAAAGCATGGAAGAA ACAGAAACCCAACAACTGA
AA sequence Show only first row Show all	>Potri.006G050000.2 pacid=42767689 polypeptide=Potri.006G050000.2.p locus=Potri.006G050000 ID=Potri.006G050000.2.v4.1 annot-version=v4.1 MKHKKPEPEPETQLKNDTEICQQLLSRYSASTAPQHRHLLATAAALRSILTAESLPLTPSAYFAAAINNLSDSKTLDSTAIAALLSFVSIVVPLIEEKGI KDAKVKEAVAVLVEVAVEREGVGVGSLGCVVKCLGVMILGFCDLEEWDSVKAGFESLIKFSVDKRPKVRRSAQDCLEKVFKSFRSSSVVKEASKLVFSLF KNYMPVALTLSESRIFDESKEETLSKLEHLEVIHMLNLLKVTVPYLSVKISSKVLPELVKLLRSDFSVLTRQIFQNIEAFFVSSSDEVIGPQQENIIDSL SGYLSLGQKNPVDTVLSAATLLRTILNKLQAGGSSSWTSNGHKIFGSTAGLLTDEATASQASDIMKELINHYIDPKEVEINESQSLDDSSQESEEANMIK STCAVLENILNSCDGIPNEHLLGVISVLFKKLGDISHIFMKNIVLKLADLMNDAGRDKPDTNHLQNCMGSAVVAIGPEKMLMLVPISIDPDSFTCSNIWL VPILKDHVVGASLGYYMEHIVPLAKSFKQAGQKVRKSVIGQDLQAHAHGLWGLLPAFCRYPVDTHKKFGALAELMITSLKKYSFMHQNIAVALQVLVNQN RSVMLSKSDGGASNDNAVKDSVLECQNVATYSKKTATKNIKALTSCSSKLLHALADLFVDSQSGKPSYIKDAIACLASISNSSVTQKVFMSLLKRFRFVT GEGEFQQPKSDGDELIEEEARSLNVQEKDVHRCVMMELASSLVVGAKTDFIDLIYNFVVFIFQATDVTGHCEAYHTLSRILQEHAWFCSSRFVELIDLLL GLKSPDDVATLKNRFACFHILIVHALEMTSEEKNTKAFLMLNEIILILKDAREEARKVAYDTLLFISSSLRNSSCATSREAYQRLISMITGYLSGSSPYI TSGAVSALSVLVYNDTEICLKVPDLVPSLLSLLQNKALEVIKAVLGFTKVLVSCLQAKDLQNFLSDIIIGVLPWSSVSRNHFRSKVTVILEIMIRKCGSS AVELDIPEKHKSFFKTVLQNRHHKSTSKEAGTNDTEKTPADISPKRVEKPKNKESGSVPERTGSAHPGKRKREKKHNEKPPTSSKPGISTGDGSGREGAK RARHLEHEKSIKVRSEDGWKKRNFNKEQTGDGKRKMEHRNTNKKGEASFRGPSSASKLHKPQKAWKKQKPNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	0	1
AT5G35910			Polynucleotidyl transferase, r...		Potri.019G038701 [exp]	1.41	0.8864
AT4G18375			RNA-binding KH domain-containi...		Potri.004G066100 [exp]	2.82	0.8357
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	3.87	0.8820
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.001G173500 [exp]	4.00	0.8793
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	6.92	0.8061
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	11.48	0.8479
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Potri.007G035300 [exp]	11.48	0.7680
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	13.78	0.8513
AT5G40520			unknown protein		Potri.017G018300 [exp]	14.83	0.8117
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.008G103000 [exp]	15.96	0.8158

Compare expression of checked genes

Potri.006G050000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.