Plant FIBer expression Database

Potri.006G050100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57400 349 / 3e-115 unknown protein
AT5G52500 272 / 8e-87 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G056300
[exp]
762 / 0 AT3G57400 343 / 5e-113 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018074
[exp]
389 / 2e-129 AT3G57400 290 / 1e-91 unknown protein
Lus10042066
[exp]
187 / 4e-56 AT3G57400 159 / 3e-46 unknown protein
Lus10042067
[exp]
182 / 6e-53 AT3G57400 107 / 4e-26 unknown protein
Lus10035449
[exp]
49 / 5e-07 ND /
PFAM info
Representative CDS sequence
>Potri.006G050100.1 pacid=42768502 polypeptide=Potri.006G050100.1.p locus=Potri.006G050100 ID=Potri.006G050100.1.v4.1 annot-version=v4.1
ATGGGAATCATGGCAAAGTCCAAAAGCTGCAAAAACAGCGGTGAAAATTGGGGCATGGGCTTCCTCCTCGTCTTTTTCCCTGAAGACACCTCCTCCTCCT
CCTCCTCCCCAACAGCCACCCCCACTGTTCCATTCTCCTCCTCGTCCTCCTCACCGACACCACCAAAAACTACTTCCAGCCCCAATTGTAACTCATCAAA
AATAATTAGAAGAACCAACTCAAACAACCCCATCATCACCAAGACTCAATCCACAATCTCAATCTGTGCTCTTCTACTCTTGCTCACTCTCCTTCTCTTC
ACTCTCTCAACTTTTGAACCCACAATCCCCTACCCTTCCACCACCATTAGTATCAACAAAACCCCACGTAGGTTTTTGTCTCAAAAGCCTCAAAACAAGC
TTAAAACCGCCAAAGCCAGTTACTTCTCTATGTTTTCAAGAAGGCCAGAAGATAATAAAGGAAGCGAAAAGTTTCGTTCTTTATTCGCTTTACAAGGAAT
GGGCAAGCTTTACAGGCGCGGGACTAGGGCAATGAGTGATCTTGTTGTTGCTCATGTAGTGGAAGAGACCAATGAAGCTGAATTTAGACTCTTTTTAAGA
GTCTTGCATCGGTCAGGTCTCACAGCAAGAGCCGATGTTGTTTTTGTCTTTCCTTCTTCTTTGTTCGCTTCAAGATTTGAATCACTGATCCAAGAAGAGA
ATGACTCGTTCTTGAAACTCGTTAATTATTATAAAAAATTGAACGGCACGAGTCATGACTCCGTGTCGGCGTCGAGTTTTGATGTGAGTCAGTTTTTGAA
AAGCGAGAAGAAGCAGGTGGGAGAGCCTCTGTGGGGAAAGAGAATTCGAGTTAATGGTGATGGCAATTTCAGTGAGTCGGGAGAGGGTGAAGGGGAGTTG
ACTTGGTTTCGCTATGGCTCAGTGGTGGGTTTTGAAGCGAGTGAGCTTGACCCGGAAAACTCACTTGCTGGGTTTTTAGATCATTTGCCAATGAGTTTGA
GAAGATGGGCTTGTTATCCAATGTTACTCGGTCGAGTTCGGAGAAATTTTAAGCATGTAATGTTAGTGGACGTGAAAAATTTGGTGTTATTCAGCGACCC
ACTTGGCCGAGTCAGGAACCGGAGTCCAGAATCAGTTTATATAAGAACAAAACAAGAAAGTGGTTCAAGCAAGCATAATAGGAAAATCTCGGAGAAAGCT
CAGTCTCATTCTCAAGTTAACTCAGCGATTTTGATGGGTGGAGCACGGGGAATTCGAAGATTGTCTATTGCCATGTTAACAGAAATCGCTCGAGTTGCGA
TGCAACACAAGAAGAAGAGCTCAGTTACCGAGTCAGGGATTTTAAGTCAACTCGTGGGCAATGTGCATGTATTGAAGAACATTGATTTGATTACAACGAC
CGAGTCAATCCCGGGTATGAGTTCACTCACTGGCTCAAACTCGTCTTTGTGGAATAATTATAGTATAATCCAACGTGGGGGTAATAGTAATCATGATATT
AACTCCATTATCATGAAACAAATATGTTCACGCGAAGCAGAATCTTCTGCTTATAGGGATTGCTAA
AA sequence
>Potri.006G050100.1 pacid=42768502 polypeptide=Potri.006G050100.1.p locus=Potri.006G050100 ID=Potri.006G050100.1.v4.1 annot-version=v4.1
MGIMAKSKSCKNSGENWGMGFLLVFFPEDTSSSSSSPTATPTVPFSSSSSSPTPPKTTSSPNCNSSKIIRRTNSNNPIITKTQSTISICALLLLLTLLLF
TLSTFEPTIPYPSTTISINKTPRRFLSQKPQNKLKTAKASYFSMFSRRPEDNKGSEKFRSLFALQGMGKLYRRGTRAMSDLVVAHVVEETNEAEFRLFLR
VLHRSGLTARADVVFVFPSSLFASRFESLIQEENDSFLKLVNYYKKLNGTSHDSVSASSFDVSQFLKSEKKQVGEPLWGKRIRVNGDGNFSESGEGEGEL
TWFRYGSVVGFEASELDPENSLAGFLDHLPMSLRRWACYPMLLGRVRRNFKHVMLVDVKNLVLFSDPLGRVRNRSPESVYIRTKQESGSSKHNRKISEKA
QSHSQVNSAILMGGARGIRRLSIAMLTEIARVAMQHKKKSSVTESGILSQLVGNVHVLKNIDLITTTESIPGMSSLTGSNSSLWNNYSIIQRGGNSNHDI
NSIIMKQICSREAESSAYRDC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57400 unknown protein Potri.006G050100
[exp]
0 1
AT2G26640 KCS11 3-ketoacyl-CoA synthase 11 (.1... Potri.018G032200
[exp]
4.00 0.7599
AT3G15210 AP2_ERF ATERF4, RAP2.5... RELATED TO AP2 5, ethylene res... Potri.001G397200
[exp]
22.49 0.7492
Potri.002G119250
[exp]
63.71 0.7103
AT5G03230 Protein of unknown function, D... Potri.006G127900
[exp]
78.23 0.7142
AT3G21070 NADK1, ATNADK-1 NAD kinase 1 (.1.2) Potri.009G051500
[exp]
89.48 0.7106 NADK1.2
AT3G24050 GATA GATA1 GATA transcription factor 1 (.... Potri.001G053500
[exp]
91.78 0.6974
AT4G25835 P-loop containing nucleoside t... Potri.009G024400
[exp]
96.56 0.7071
AT1G27200 Domain of unknown function (DU... Potri.010G039000
[exp]
100.31 0.7076
AT5G26751 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RE... Potri.014G115600
[exp]
108.28 0.6904
AT3G61460 BRH1 brassinosteroid-responsive RIN... Potri.014G087700
[exp]
118.70 0.6978 Pt-BRH1.1

Potri.006G050100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.