Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	VLN2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41740 1340 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 1312 / 0 ATVLN3, VLN3 villin 3 (.1) AT4G30160 790 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 775 / 0 VLN5 villin 5, villin, putative (.1) AT2G29890 594 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056200 [exp] 1422 / 0 AT2G41740 1248 / 0.0 villin 2 (.1) Potri.018G089700 [exp] 798 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.006G165300 [exp] 793 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.009G045000 [exp] 614 / 0 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035450 [exp] 1413 / 0 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10031066 [exp] 1327 / 0 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10015333 [exp] 747 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10005861 [exp] 629 / 0 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10025461 [exp] 535 / 1e-176 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10015332 [exp] 82 / 2e-18 AT4G30160 100 / 4e-26 villin 4 (.1.2) Lus10015334 [exp] 74 / 1e-15 AT4G30160 132 / 3e-37 villin 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat CL0092 [poplar] [flax] PF02209 [poplar] [flax] VHP Villin headpiece domain
Representative CDS sequence Show only first row Show all	>Potri.006G050200.7 pacid=42768408 polypeptide=Potri.006G050200.7.p locus=Potri.006G050200 ID=Potri.006G050200.7.v4.1 annot-version=v4.1 ATGTCTAGCTCTACAAAAGCTTTGGATCCTGCGTTTCAGGGAGTGGGCCAGAGACCAGGGACTGAAATTTGGCGAATCGAGAATTTTCAGCCAGTTCCAC TGCCAAAATCTGATCATGGAAAATTCTACATGGGGGATTCTTACATTGTTTTGCAGACAACCCCTGGCAAAGGAGGTGCTTATCTGTACGATATCCACTT CTGGATTGGAAAAGATACTAGTCAGGATGAAGCTGGAACAGCAGCTATCAAAACCATTGAACTGGATGCAGTTCTTGGAGGGCGTGCGGTTCAGCACAGG GAACTTCAAGGACATGAATCTGACAAATTTTTGGCATACTTCAAACCCTGTATTATACCATTAGAGGGGGGTGTTGCAACTGGGTTTAAAAAAGCTGAGG AGGAAGCATTTGAAACACGATTGTATGTATGTAGAGGGAAACGTGTTGTCAGAATGAAGCAGGTTCCTTTTGCCCGGTCATCATTAAATCACGATGACGT GTTTATCTTGGATACTGAGAACAAGATCTATCAATTCAATGGTGCAAACTCTAATATCCAGGAAAGAGCCAAGGCTTTGGAAGTGATTCAGTTTTTGAAA GAAAAGTATCATGATGGAACATGTGATGTTGCAATTGTTGATGACGGGAAGTTAGACACTGAGTCAGACTCTGGTGAATTCTGGGTCCTATTTGGTGGTT TTGCTCCAATTGGCAAAAAGGTTGTCAGTGAAGATGACATCATCCTGGAGACAACTCCAGCCAAGCTTTACAGCATTACTGATGGTGAGGTGAAGATGGT AGATGGCGAGCTGTCCAAAGGACTGTTAGAAAACAATAAATGTTATCTCCTTGACTGTGGTTCTGAGGTATTTCTTTGGGTTGGCCGTGTAACACAAGTG GAGGAGAGAAAAGCTGCTAGTCAGGCTGCTGAGGAATTTGTGGTGAGCCAAAACAGGCCGAAAGCTACTCGCATAACCAGACTGATTCAAGGTTATGAGA CACATTCGTTCAAGTCAAACTTTGATTCTTGGCCTGCTGGATCCGCAGCTCCTGGTGCTGAAGAGGGAAGAGGGAAGGTAGCAGCTTTGCTGAAGCAACA AGGTGTTGGTCTCAAGGGTATGACAAAAAGCGCTCCTGTAAACGAGGAAGTACCACCTTTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGTGCATCAAC GGCAGTGCAAAGACTCCATTGCCAAAGGAGGATATTGGTAAATTTTATAGTGGAGATTGCTACATCATACTCTATACCTATCACTCTGGTGATAGGAAAG AAGATTACCTTCTCTGCTGTTGGTTTGGAAACAATAGCATAGAGGAGGACCAGAAGATGGCTGCTCGGCTGGCTAATACAATGTCCAACTCATTAAAGGG CAGACCTGTACAGGGTCGTATTTTTCAAGGTAAGGAGCCTCCACAATTTGTAGCACTTTTTCAGCCTTTGGTGATCCTCAAGGGTGGTCAGAGCTCTGGT TACAAGAATTCTCTAGCCGAGAAAGGATCGCCAGATGAAACCTACACTGCAGATTCTGTTGCACTCTTTCGGATATCTGGAACTTCAGTTCATAACAATA AGGCAGTGCAAGTTGAAGCAGTGGCAACATCATTGAACCCTGCAGAGTGCTTCCTTCTGCAATCTGGCTCGTCAATTTTCACCTGGCATGGGAATCAAAG CACCTTTGAGCAGCAGCAGCTAGCTGCAAAAATTGCTGAATTTTTGAAGCCAGGAGTTGCGTTGAAACATGCTAAAGAAGGAACTGAAAGCTCATCTTTC TGGTTTGCCCTTGGAGGCAAACAAAGTTACACCATCAAAAAAGTTTCTCCAGAAACTGTCAGAGATCCTCACTTGTTCGAATTCTCCTTAAATAAAGGGA AATTTCAGGTTGAGGAAATTTACAACTTCTCTCAAGATGACTTGTTGACTGAGGATATCTTGATACTTGATACACATGCAGAAGTGTTTGTTTGGGTTGG CCAGTCTGTAGATCCCAAAGAAAAGCAAATTGTTTTTGATATTGGCCAGAAATACATTGAGATGGCTGTATCTCTGGATGGTTTGTCTCCATTTGTACCA CTGTATAAAGTTACCGAAGGAAATGAACCATCATTCTTTACAACATACTTTTTGTGGGATCCCATAAAAGCCACTGTTCAAGGAAACTCATTCCAAAAGA AGGTTGCATTACTCTTTGGGTTAGGACATCACGCTGTGGAGGACAAGTCCAATGGAAATCAAGGAGGGCCAACCCAACGGGCTTCAGCGTTAGCTGCCTT GTCTTCTGCATTTAATCCTTCTGGAAAGTCATCACATCTGGTGCAGGATAGGTCTAATGGGTCCAGTCAAGGAGGGCCGACACAGAGAGCTTCAGCTTTA GCTGCCTTATCCTCTGCATTCAATTCATCCCCAGGATCGAAAACTACTGCTCCAAGGCCATCTGGGATTGGTCAGGGATCACAAAGAGCTGCAGCTGTTG CTGCTCTTTCATCAGTTCTTACTGCTGAAAAGAAAACACCCGAAACCTCTCCTTCTCGTAGTCCTCGCTCAGAAACTAACCTTCCTACTGAAGGGAAAAG TGAAACACAATCTGAAGTAGAGGGTTCTGAAGGAGTTGCAGAAGTCAAGGAAATGGAAGAGACTGCATCTGTACCTGAAAGCAATGGGGAGGATTCAGAA AGAAAGCAAGATACAGAACAGGAGGAGAATGATGATGGGAATGGTCAAAGTACATTCAGTTATGATCAACTGAAGGCTCACTCTGACAATCCTGTAAAAG GAATTGATTTTAAACGGAGAGAGGCTTATCTATCAGACGAGGAGTTCCAAACTGTTTTTGGGGTGACAAAAGAAGCATTTTATAAAATGCCAAAATGGAA GCAGGACATGCAGAAGAAGAAATTTGATTTATTCTAG
AA sequence Show only first row Show all	>Potri.006G050200.7 pacid=42768408 polypeptide=Potri.006G050200.7.p locus=Potri.006G050200 ID=Potri.006G050200.7.v4.1 annot-version=v4.1 MSSSTKALDPAFQGVGQRPGTEIWRIENFQPVPLPKSDHGKFYMGDSYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTIELDAVLGGRAVQHR ELQGHESDKFLAYFKPCIIPLEGGVATGFKKAEEEAFETRLYVCRGKRVVRMKQVPFARSSLNHDDVFILDTENKIYQFNGANSNIQERAKALEVIQFLK EKYHDGTCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVVSEDDIILETTPAKLYSITDGEVKMVDGELSKGLLENNKCYLLDCGSEVFLWVGRVTQV EERKAASQAAEEFVVSQNRPKATRITRLIQGYETHSFKSNFDSWPAGSAAPGAEEGRGKVAALLKQQGVGLKGMTKSAPVNEEVPPLLEGGGKMEVWCIN GSAKTPLPKEDIGKFYSGDCYIILYTYHSGDRKEDYLLCCWFGNNSIEEDQKMAARLANTMSNSLKGRPVQGRIFQGKEPPQFVALFQPLVILKGGQSSG YKNSLAEKGSPDETYTADSVALFRISGTSVHNNKAVQVEAVATSLNPAECFLLQSGSSIFTWHGNQSTFEQQQLAAKIAEFLKPGVALKHAKEGTESSSF WFALGGKQSYTIKKVSPETVRDPHLFEFSLNKGKFQVEEIYNFSQDDLLTEDILILDTHAEVFVWVGQSVDPKEKQIVFDIGQKYIEMAVSLDGLSPFVP LYKVTEGNEPSFFTTYFLWDPIKATVQGNSFQKKVALLFGLGHHAVEDKSNGNQGGPTQRASALAALSSAFNPSGKSSHLVQDRSNGSSQGGPTQRASAL AALSSAFNSSPGSKTTAPRPSGIGQGSQRAAAVAALSSVLTAEKKTPETSPSRSPRSETNLPTEGKSETQSEVEGSEGVAEVKEMEETASVPESNGEDSE RKQDTEQEENDDGNGQSTFSYDQLKAHSDNPVKGIDFKRREAYLSDEEFQTVFGVTKEAFYKMPKWKQDMQKKKFDLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Potri.006G050200 [exp]	0	1	VLN2.1
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.003G052100 [exp]	3.87	0.9213
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	4.79	0.9398
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	9.69	0.9348
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	11.87	0.9265
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Potri.010G062000 [exp]	14.49	0.8875
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	15.19	0.9129
AT1G04750		ATVAMP7B, ATVAM...	VESICLE-ASSOCIATED MEMBRANE PR...		Potri.003G177700 [exp]	16.30	0.9178	SAR1.5
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	16.43	0.9131
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	18.43	0.9257	Pt-ADL5.1
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	20.34	0.9071

Compare expression of checked genes

Potri.006G050200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.