Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41810 521 / 0 Protein of unknown function, DUF642 (.1) AT2G41800 496 / 5e-177 Protein of unknown function, DUF642 (.1) AT3G08030 468 / 6e-166 Protein of unknown function, DUF642 (.1.2) AT4G32460 408 / 2e-142 Protein of unknown function, DUF642 (.1.2) AT5G11420 397 / 4e-138 Protein of unknown function, DUF642 (.1) AT5G25460 396 / 2e-137 Protein of unknown function, DUF642 (.1) AT1G80240 376 / 9e-130 Protein of unknown function, DUF642 (.1) AT2G34510 317 / 5e-106 Protein of unknown function, DUF642 (.1) AT1G29980 316 / 2e-105 Protein of unknown function, DUF642 (.1.2) AT5G14150 148 / 6e-41 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056100 [exp] 678 / 0 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 672 / 0 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 493 / 8e-176 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 488 / 9e-174 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G250100 [exp] 421 / 3e-147 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 412 / 5e-143 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 376 / 2e-129 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 374 / 3e-128 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 328 / 1e-110 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031067 [exp] 513 / 0 AT2G41810 478 / 1e-169 Protein of unknown function, DUF642 (.1) Lus10039602 [exp] 509 / 0 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10029501 [exp] 509 / 0 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10035451 [exp] 482 / 6e-171 AT2G41810 476 / 1e-168 Protein of unknown function, DUF642 (.1) Lus10029502 [exp] 447 / 1e-157 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 446 / 1e-157 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 445 / 2e-156 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 442 / 1e-155 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10013112 [exp] 411 / 3e-143 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 408 / 4e-142 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF04862 [poplar] [flax] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Potri.006G050400.2 pacid=42770161 polypeptide=Potri.006G050400.2.p locus=Potri.006G050400 ID=Potri.006G050400.2.v4.1 annot-version=v4.1 ATGGCTCTGTTTCTCTCCCTTTGCGTTGCTCTCATTTTCTCCTTAGCTCATGCTGCTAGTCCACCTCCACTTCTTGATGGACTTGTTGAAAATGGGGACT TTGAAGAGGCACCAGCAAAATCAAACCTCAAGAAAACAGTGATCATAGGAAAATACTCACTCCCCAAATGGGAAATCAATGGCTTAGTAGAGTATGTCTC GGGTGGACCACAACCAGGTGGCTTCTTCCTAGCCGTTCCTCGAGGGGTCCATGCAGTGAGGCTAGGCAATGAGGCATCTATCTCTCAAAATCTTACTCTC AAACGAGGTTCAATCTATGCTCTCACGTTTGGAGCCACCAGAACCTGTGCTCAGGATGAGGTGCTAAGGGTCTCAGTCCCTGGCCAATCAAGTGACCTCC CTCTTCAGACCCTTTATAGCAGCGATGGGGGTGACACTTATTCCTTGGCTTGGAAGGCTACTTCTGATGTTGTCAAGGTCACATTTCATAATCTCGGAAT TCAAGAGGACCCCTCTTGTGGTCCTATAGTGGATGCTATTGCAATCAAGGAGATGTCACCTCTCCGGCGTACTATAGGCAACCTAGTGAAAAACGGTGGC TTTGAAGTTGGTCCGCATATGTTCAAGAACTTCTCAACAGGTGTCTTGCTCCCTCCCAAGCAACAAGATCAAATTTCACCCCTCCCTGGCTGGATCATTG AATCCCTCAAACCAGTAAAATACATTGACAGCAAGCATTTCTTTGTGCCCGAAGGATTTGCGGCAATTGAATTAGTAGCAGGGAGAGAGAGTGCCATAGC ACAAGTCATTAGGACAATTCCTGACAAATTCTACAACCTAACATTCACAGTCGGAGATGCAAAGAATGCTTGCCATGGATCAATGATGGTTGAGGCATTT GCTGCCAAGGAAACTGTCAAAGTTCCCTACGTCTCACAGGGAAAAGGTGGATACAAGACTGCAATTTTGAGGTTCCAGGCAATTTCAGCTAGGACAAGGA TTACATTTTACAGTGCATACTATCACAATAAGCAGCACGATTATGGTCACATGTGTGGCCCTGTCTTAGATGATGTCAGTGTGTTTCCTACTCACTAA
AA sequence Show only first row Show all	>Potri.006G050400.2 pacid=42770161 polypeptide=Potri.006G050400.2.p locus=Potri.006G050400 ID=Potri.006G050400.2.v4.1 annot-version=v4.1 MALFLSLCVALIFSLAHAASPPPLLDGLVENGDFEEAPAKSNLKKTVIIGKYSLPKWEINGLVEYVSGGPQPGGFFLAVPRGVHAVRLGNEASISQNLTL KRGSIYALTFGATRTCAQDEVLRVSVPGQSSDLPLQTLYSSDGGDTYSLAWKATSDVVKVTFHNLGIQEDPSCGPIVDAIAIKEMSPLRRTIGNLVKNGG FEVGPHMFKNFSTGVLLPPKQQDQISPLPGWIIESLKPVKYIDSKHFFVPEGFAAIELVAGRESAIAQVIRTIPDKFYNLTFTVGDAKNACHGSMMVEAF AAKETVKVPYVSQGKGGYKTAILRFQAISARTRITFYSAYYHNKQHDYGHMCGPVLDDVSVFPTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	0	1
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	2.23	0.9727	Pt-GASA5.2
					Potri.001G073166 [exp]	2.44	0.9744
					Potri.010G072200 [exp]	2.64	0.9464
AT2G41810			Protein of unknown function, D...		Potri.006G050300 [exp]	3.74	0.9333
AT4G22165			F-box family protein with a do...		Potri.004G137700 [exp]	4.47	0.9374
AT1G57775			Protein of unknown function (D...		Potri.004G110901 [exp]	5.56	0.8580
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	6.00	0.9708
					Potri.006G240450 [exp]	7.74	0.8584
					Potri.018G145526 [exp]	7.93	0.9420
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G288500 [exp]	8.12	0.9367

Compare expression of checked genes

Potri.006G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.