Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41790 1504 / 0 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 1261 / 0 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3) AT1G06900 489 / 3e-157 Insulinase (Peptidase family M16) family protein (.1) AT3G57460 239 / 7e-71 catalytics;metal ion binding (.1) AT5G42390 58 / 3e-08 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) AT3G02090 55 / 3e-07 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT5G01440 45 / 0.0002 unknown protein AT5G56730 45 / 0.0004 Insulinase (Peptidase family M16) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154600 [exp] 475 / 4e-151 AT1G06900 1461 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.014G149200 [exp] 57 / 6e-08 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.004G118900 [exp] 56 / 8e-08 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.017G092400 [exp] 56 / 8e-08 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.002G235700 [exp] 56 / 2e-07 AT5G42390 1822 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018072 [exp] 1572 / 0 AT2G41790 1451 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10018071 [exp] 1452 / 0 AT2G41790 1377 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10042064 [exp] 1401 / 0 AT2G41790 1320 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10042213 [exp] 445 / 1e-139 AT1G06900 1311 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10008604 [exp] 433 / 2e-135 AT1G06900 1271 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10040885 [exp] 59 / 1e-08 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040886 [exp] 57 / 4e-08 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004939 [exp] 57 / 8e-08 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10021970 [exp] 54 / 8e-07 AT5G42390 1122 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10041263 [exp] 54 / 1e-06 AT5G42390 1789 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain CL0094 [poplar] [flax] Peptidase_ME PF16187 [poplar] [flax] Peptidase_M16_M Middle or third domain of peptidase_M16
Representative CDS sequence Show only first row Show all	>Potri.006G050700.3 pacid=42767519 polypeptide=Potri.006G050700.3.p locus=Potri.006G050700 ID=Potri.006G050700.3.v4.1 annot-version=v4.1 ATGGAGATAGTGAAGGCAAGGACTGATAAGCGAGAATACAAGAGAATTGTTCTTCCAAATGCTCTCCAAGTCCTTCTCATTAGCGATCCCGACACCGATA AGTGTGCGGCTTCTATGAATGTTAGTGTTGGTTGTTTCAGTGATCCTGATGGTCTTGAAGGACTCGCTCATTTTCTTGAGCATATGCTGTTTTATGCAAG TGAGAAATATCCACTAGAGGACAGTTACTCTAAGTACATTATTGAGCATGGGGGCAGTACCAATGCTTATACGACGTCGGACCACACCAACTATCATTTT GATGTTAACAGTGATTGTTTTGAAGATGCTCTGGACAGATTTGCACAGTTCTTTATCAAACCGTTGATGTCAGCGGATGCAACCGTTAGGGAAATTAAGG CTGTTGATTCTGAAAATCAGAAAAACTTACTGTCTGATGGTTGGAGAATAAACCAGCTTCAGAAACATTTAAGTGAGGAAGGCCACCCGTACCATAAATT CAGTACAGGGAATTGGGACACTTTGGAAGTTCAGCCAAAAGAAAAGGGGCTGGATACAAGACTTGAGCTTATAAAGCTCTATGAAGAAAATTATTCAGCC AACCTCATGAACTTGGTAATATATGCAAAAGAAAGCCTTGATAAAATACAAAGCCTTGTCGAGGAAAAGTTCCAGGAAATTCGAAATAATGATAGGAGCT GTTTCTCTTTTCCTGGTCAGCCTTGCTCCTCGGAGCATTTACAGATACTTGTTAGAACTGTCCCGATAAAACAAGGTCACAAATTGAGAATTGTTTGGCC AATAACTCCGGGCATTCTTCACTACAAGGAAGGACCATGCAGGTATCTTGGCCACCTGATTGGCCATGAAGGAGAAGGATCTTTGTTTTATGTCTTGAAA ACCTTAGGATGGGCCACTGATTTATCTGCTGGTGAAGTAGATGGGACAACAGAGTTCGCTTTCTTCACTGCAGTAATTAATCTTACTGATGCTGGCCATG AGCACATGCAAGATGTTGTTGGACTGTTATTCAAATACATTCACCTCTTGCAGCAGTCTGGTGTTTGCAAATGGATATTTGATGAGCTTGCAGCTATTTG TGAGACATCATTCCACTATCAAGACAAAACCCCTCCAATTAGTTATGTTGTCCGGATTGCATCCAATATGCAGCTATATCCTCAAAAAGATTGGCTGGTG GGATCCTCCTTGCCTTCTAATTTCAGTCCAAGCATAATTCAGACGGTACTTAATCAACTTTCTCCAGACAATGTTCGAATCTTTTGGGAATCGAAGAAAT TTGAAGGGCAAACTGCAATGACTGAGCCATGGTACAAAACTGCATACAGTGTTGAGAAAATCACTGGCTCCATGATCCAGGAATGGATGCTATTTGCTCC TAATGAAGATTTGCATCTGCCAGCGCCTAATGTATTCATACCTACTGACTTATCACTTAAGGATGCACAAGAGAAGCAGGTCAAATTCCCAGTTCTCTTA AGAAAGTCATCCTCTTCATCACTATGGTACAAGCCTGACACGATGTTCTCTACTCCTAAAGCTTATGTTAAGATAGATTTCAACTGCCCCTTTGCTAGCA GCTCTCCTGAGACTGAAGTTCTTACTGACATTTTTGCGCGGTTGTTGATGGATGACCTGAATGATTATGCTTATTATGCACAGGTTGCTGGTCTATATTA TGGCATAAGCAACACAGATAGTGGTTTTCAGGTCACTGTTGTTGGTTACAACCACAAACTGAGGATCTTGTTGGAAACTGTTATTGAAAAAATTTCAAAT TTTAAAGTGAAGCCCGACAGATTTTCTGTGATCAAGGAAATGGTGACAAAGGAATATGGAAATTTGAAGTTCCAGCAGCCCTATCAGCAGGCTATGTACT ATTGTTCTCTCTTACTACAGGATCAAACATGGCCTTGGATGGAACAACTTGAAATACTTCCTCATCTTCAGGCTGAAGATCTTGCTAAGTTTATTCCATT GATGCTTTCAAGAGCCTTCTTAGAGTGCTATATAGCAGGTAATATTGAACGCAGCGAGGCAGAGTCAATGATTCTGCATATTGAAGATGTTTTTAATGAG GGTCCAGACCCTATATGCCAACCCTTATTCCCGTCCCAGCATTTAACAAGTAGAGTTATCAAGCTTGAAAGGGGCATCAATTATTTGTATCCAATTGAAG GCTTAAATCCAGATGATGAAAATTCTGCTCTGGTGCATTACATACAGATTCATCGAGATGATTTTACATGGAATGTGAAACTTCAACTGCTTGCTTTAAT TGCAAAGCAGCCAGCTTTCCACCAGCTTAGATCTGTTGAGCAACTTGGGTACATTACTGTTCTCATGCAAAGAAATGACTCTGGTATTCGCGGACTGCAG TTTATCATTCAATCTACAGTGAAGGGTCCTGGACAAATTGATTTGAGAGTTGAGGCATTCCTCAAGATGTTTGAAACTAAACTTTATGGGATGACCAATG ATGAATTCAAGAGTAACGTGAATGCTTTGATAGATATGAAACTTGAGAAGCACAAGAATTTAAGAGAAGAATCTGCATTTTTCTGGCGAGAGATTTCTGA TGGGACCCTGAAGTTTGATAGGCGAGAATGCGAGGTGGCCGCGTTAAAACAACTTACACAACAGGACTTGATAGATTTCTTTGATGAACATGTAAAAGTT GGTGCACCTCGGAAGAGGACATTGAGCGTGCGGGTTTACGGGAAACTGCATTCATGTGAGTACCCATCAGACAAAAGCCAACAGCTCCCGCCCAACGCAG TTCAGATAGAAGATATTTTCAGTTTCAGAAGATCACAACCTCTTTATGGTTCATTTAAAGGAGGCTTTGGTCACATGAAGCTGTAG
AA sequence Show only first row Show all	>Potri.006G050700.3 pacid=42767519 polypeptide=Potri.006G050700.3.p locus=Potri.006G050700 ID=Potri.006G050700.3.v4.1 annot-version=v4.1 MEIVKARTDKREYKRIVLPNALQVLLISDPDTDKCAASMNVSVGCFSDPDGLEGLAHFLEHMLFYASEKYPLEDSYSKYIIEHGGSTNAYTTSDHTNYHF DVNSDCFEDALDRFAQFFIKPLMSADATVREIKAVDSENQKNLLSDGWRINQLQKHLSEEGHPYHKFSTGNWDTLEVQPKEKGLDTRLELIKLYEENYSA NLMNLVIYAKESLDKIQSLVEEKFQEIRNNDRSCFSFPGQPCSSEHLQILVRTVPIKQGHKLRIVWPITPGILHYKEGPCRYLGHLIGHEGEGSLFYVLK TLGWATDLSAGEVDGTTEFAFFTAVINLTDAGHEHMQDVVGLLFKYIHLLQQSGVCKWIFDELAAICETSFHYQDKTPPISYVVRIASNMQLYPQKDWLV GSSLPSNFSPSIIQTVLNQLSPDNVRIFWESKKFEGQTAMTEPWYKTAYSVEKITGSMIQEWMLFAPNEDLHLPAPNVFIPTDLSLKDAQEKQVKFPVLL RKSSSSSLWYKPDTMFSTPKAYVKIDFNCPFASSSPETEVLTDIFARLLMDDLNDYAYYAQVAGLYYGISNTDSGFQVTVVGYNHKLRILLETVIEKISN FKVKPDRFSVIKEMVTKEYGNLKFQQPYQQAMYYCSLLLQDQTWPWMEQLEILPHLQAEDLAKFIPLMLSRAFLECYIAGNIERSEAESMILHIEDVFNE GPDPICQPLFPSQHLTSRVIKLERGINYLYPIEGLNPDDENSALVHYIQIHRDDFTWNVKLQLLALIAKQPAFHQLRSVEQLGYITVLMQRNDSGIRGLQ FIIQSTVKGPGQIDLRVEAFLKMFETKLYGMTNDEFKSNVNALIDMKLEKHKNLREESAFFWREISDGTLKFDRRECEVAALKQLTQQDLIDFFDEHVKV GAPRKRTLSVRVYGKLHSCEYPSDKSQQLPPNAVQIEDIFSFRRSQPLYGSFKGGFGHMKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41790			Insulinase (Peptidase family M...		Potri.006G050700 [exp]	0	1
AT5G64880			unknown protein		Potri.005G083900 [exp]	2.44	0.8461
AT1G15030			Protein of unknown function (D...		Potri.013G149400 [exp]	3.46	0.8183
AT1G71695			Peroxidase superfamily protein...		Potri.005G195700 [exp]	5.74	0.8160
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	15.29	0.7945
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.019G085400 [exp]	16.12	0.7930
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	23.06	0.7867
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	23.10	0.8060
AT5G67390			unknown protein		Potri.005G145800 [exp]	23.55	0.8087
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G111300 [exp]	23.91	0.7689
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	24.73	0.7900

Compare expression of checked genes

Potri.006G050700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.