Plant FIBer expression Database

Potri.006G051000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41770 1198 / 0 Protein of unknown function (DUF288) (.1)
AT3G57420 1153 / 0 Protein of unknown function (DUF288) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G055700
[exp]
1452 / 0 AT2G41770 1202 / 0.0 Protein of unknown function (DUF288) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035458
[exp]
1241 / 0 AT2G41770 1204 / 0.0 Protein of unknown function (DUF288) (.1)
Lus10031076
[exp]
1220 / 0 AT2G41770 1198 / 0.0 Protein of unknown function (DUF288) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF03385 STELLO STELLO glycosyltransferases
Representative CDS sequence
>Potri.006G051000.1 pacid=42769126 polypeptide=Potri.006G051000.1.p locus=Potri.006G051000 ID=Potri.006G051000.1.v4.1 annot-version=v4.1
ATGTTAGTCCAAGATCGTGTAACCACTAACCCAAATCCCAAATCTCCCAAATCACAAATCAGAGCCTCCATCAACAGCCACCATCACGACCTCCACCACC
GCTTCTCAGAGTCAAAATCTTTAGATTTCTCCACATGGGTATCTGAGAATTTCTGCAAAATCGTCACAATCACGGTGCTAGTTGCCACTGTCGCCGCCAT
CCTCTTCCTCTTGAGCACTGGTGACACTGCTGCACTTAGCTACATTCAATCAAAAGCCCAACCTCTAGACAAAGCCCATCATCCTCCTCGTATAAATTGG
AACAATATCCCATCAATCGCTGACAAATCTTCGCCTTATACGAATTTCCGGTCAGAGAAATGGATTGTTGTTAGTGTCTCTCATTATCCTTCTGATTCGC
TTAAAAAGCTTGTTAGGATTAAGGGGTGGCAATTGCTAGCAATTGGGAATTCAAGGACACCAAATGATTGGTCCTTGAAGGGTGCAATTTACTTGTCTTT
AGAACAACAAGCGACTTTAGGGTTTCGGGTTTCAGGTTATCTACCTTTTGATTCTTATTTAAGGAAGAGTGTGGGGTATTTGTTTGCGATCCAACATGGG
GCGAAGAAAATTTTTGATGCTGATGATCGCGGAGAGGTTATTGATGGTGATTTAGGGAAGCATTTTGATGTGGAGTTAATAGGGGAGGGGGCTAGGCAAG
AGACTATATTGCAATATAGCCATGAGAATGAGAATAGGAGTGTAGTGAATCCTTATGTTCATTTTGGTCAAAGGACAGTTTGGCCGAGAGGGTTACCATT
AGAGAATGTGGGTGAAATTGGCCATGAAGAGTTTTACACTGAGGTTTTTGGTGGGAAACAGTTTATACAACAAGGGATATCGAATGGATTGCCTGATGTT
GATTCTGTGTTTTATCATACCAGGAAAACTGGTTTAGAAGCCTTCGATATTAGGTTTGATGAGCGTGCCCCGAAAGTGGCATTGCCTCAAGGGGTAATGA
TGCCGGTCAATTCATTTAATACGATTTACCATTCGTCAGCTTTTTGGGGTTTGATGCTTCCAGTTTCAGTTAGTACTATGGCTTCTGATGTCTTGAGAGG
CTATTGGGGGCAAAGGCTTTTGTGGGAGATTGGTGGGTATGTTGTGGTTTATCCACCGACTGTGCATAGATATGATACAGTTGGGGGGTACCCTTTTTCT
GAAGAGAAGGATCTTCATGTTAATGTTGGGAGGCTTATTAAGTTCTTGGTTGCATGGAGGTCGAGTAAGCATGAGTTGTTTGAGAAAATTTTAGAGTTGA
GTTTTGCTATGGCAGAGGAGGGGTTTTGGAGTGAGCAGGATGTGAAGTTTACTGCTGCTTGGCTTCAGGACTTGCTTGCTGTAGGGTATCAGCAGCCTAG
GTTAATGTCATTTGAATTGGACCGGCCTCGTCCTAATATAGGTCATGGGGATCGAAAGGAGTTTGTTCCTCGGAAGTTGCCATCTGTGCATCTTGGAGTG
GAGGAAACGGGGACAGTGAATTATGAGATTGGCAATTTGATTCGTTGGAGAAAGAATTTTGGGAATGTTGTGCTTATTATGTTTTGCAATGGGCCTGTTG
AACGTACTGCCCTGGAATGGAGATTACTTTATGGGAGGATATTCAAAACTGTGATTATCTTATCATCGCAGAAGAATGAAGATCTTGCTATTGAAGCAGG
GCATTTGGATCGTATGTACAAACATCTGCCTAAGATATTTGATCGATATAGCAGTGCCGAAGGCTTTTTATTCCTTCAGGATGACACCATCCTCAATTAC
TGGAATCTGCTTCAAGCGGACAAGACTAAACTATGGATTACTGACAAGGTATCCAAGTCCTGGACAACTGTGTCTACCAATGGAAACACAGGTTGGTATG
CGAAACAAGCAGAAATGGTAAGAAAAGTTGTTGGCTCAATGCCGGTTCACTTCCAAGTCAATTATAAGGAAGCCATGAAAAGTGACCAGAGCCTTGTAAT
AGGCAGCTCTGAGATATTCTACATTCCTCAGCAGCTGGTAACTGACTTTGTAGATCTTGTTGGTTTGGTGGGTGATCTTAACATTCATCAAAAGGTTGCC
ATACCCATGTTCTTTATGTCTATGGATTCACCTCAGAATTTTGATTCAGTGCTTAGCACAATGGTATATAAGCCGAAGCCACCACCTGCTAATTCAACTT
TTTATTCTGCTCAAGCACCTGCTGTTCATCCATGGAATGTGTCTAGTGAGCAAGATTTCATAAAGCTGACAAGAATAATGGCAGAAGGGGACCCGCTCCT
AATGGAGTTGTTTTGA
AA sequence
>Potri.006G051000.1 pacid=42769126 polypeptide=Potri.006G051000.1.p locus=Potri.006G051000 ID=Potri.006G051000.1.v4.1 annot-version=v4.1
MLVQDRVTTNPNPKSPKSQIRASINSHHHDLHHRFSESKSLDFSTWVSENFCKIVTITVLVATVAAILFLLSTGDTAALSYIQSKAQPLDKAHHPPRINW
NNIPSIADKSSPYTNFRSEKWIVVSVSHYPSDSLKKLVRIKGWQLLAIGNSRTPNDWSLKGAIYLSLEQQATLGFRVSGYLPFDSYLRKSVGYLFAIQHG
AKKIFDADDRGEVIDGDLGKHFDVELIGEGARQETILQYSHENENRSVVNPYVHFGQRTVWPRGLPLENVGEIGHEEFYTEVFGGKQFIQQGISNGLPDV
DSVFYHTRKTGLEAFDIRFDERAPKVALPQGVMMPVNSFNTIYHSSAFWGLMLPVSVSTMASDVLRGYWGQRLLWEIGGYVVVYPPTVHRYDTVGGYPFS
EEKDLHVNVGRLIKFLVAWRSSKHELFEKILELSFAMAEEGFWSEQDVKFTAAWLQDLLAVGYQQPRLMSFELDRPRPNIGHGDRKEFVPRKLPSVHLGV
EETGTVNYEIGNLIRWRKNFGNVVLIMFCNGPVERTALEWRLLYGRIFKTVIILSSQKNEDLAIEAGHLDRMYKHLPKIFDRYSSAEGFLFLQDDTILNY
WNLLQADKTKLWITDKVSKSWTTVSTNGNTGWYAKQAEMVRKVVGSMPVHFQVNYKEAMKSDQSLVIGSSEIFYIPQQLVTDFVDLVGLVGDLNIHQKVA
IPMFFMSMDSPQNFDSVLSTMVYKPKPPPANSTFYSAQAPAVHPWNVSSEQDFIKLTRIMAEGDPLLMELF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41770 Protein of unknown function (D... Potri.006G051000
[exp]
0 1
AT3G16630 ATKINESIN-13A, ... P-loop containing nucleoside t... Potri.008G223000
[exp]
1.00 0.9256
AT5G67210 IRX15-L IRX15-LIKE, Protein of unknown... Potri.005G141300
[exp]
6.92 0.9236
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Potri.003G151700
[exp]
9.16 0.9149 POPTRKOR2,KOR1.3
AT5G08390 Transducin/WD40 repeat-like su... Potri.008G002300
[exp]
9.32 0.8757
AT4G27060 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOL... Potri.011G136700
[exp]
9.94 0.8957
AT2G41770 Protein of unknown function (D... Potri.016G055700
[exp]
10.00 0.8969
AT4G10840 Tetratricopeptide repeat (TPR)... Potri.003G143200
[exp]
10.24 0.9050
AT5G58530 Glutaredoxin family protein (.... Potri.009G075600
[exp]
11.22 0.8845
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.006G200300
[exp]
11.83 0.9019
AT3G53710 AGD6 ARF-GAP domain 6 (.1.2) Potri.006G084000
[exp]
12.00 0.8714 ASP1.2

Potri.006G051000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.