Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GUN5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13630 2528 / 0 ABAR, CHLH, CCH1, GUN5 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018068 [exp] 941 / 0 AT5G13630 926 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2) Lus10042061 [exp] 724 / 0 AT5G13630 689 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2) Lus10018067 [exp] 644 / 0 AT5G13630 615 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2) Lus10018069 [exp] 414 / 6e-132 AT5G13630 413 / 3e-132 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02514 [poplar] [flax] CobN-Mg_chel CobN/Magnesium Chelatase PF11965 [poplar] [flax] DUF3479 Domain of unknown function (DUF3479)
Representative CDS sequence Show only first row Show all	>Potri.006G051100.1 pacid=42767427 polypeptide=Potri.006G051100.1.p locus=Potri.006G051100 ID=Potri.006G051100.1.v4.1 annot-version=v4.1 ATGGCTTCTTTAGTGTCTTCACCATTCACTTTACAATCAATCAAACCAGACCAACTCTCTTCACCATCTCAAAAACACTACTTTCTTCACTCATTTGTTC CCAGGAAAATCAACCAAACCAGCTTGAAATCCTCGTTGAAAGTAAAATGTGCTGCAATTGGCAATGGCCTGTTCACACAAACCACCCAAGAAGTTCGCCG AATAGTGCCTGAAAACAACCAGAACCTCCCCACTGTGAAGATAGTCTACGTAGTCCTTGAAGCTCAGTATCAGTCTTCACTCACTGCAGCAGTTCAAGCT CTAAACAAGACCTCCAAAGATGCATCATACGAAGTTGTTGGTTACTTAGTTGAGGAGCTTCGTGATGCGTCCACATATAAAACTTTCTGCAAGGATCTTG AAGATGCAAATATCTTTATAGGGTCATTGATTTTTGTTGAGGAGCTTGCATTGAAGGTTAAAACTGCTGTGGAGAAAGAAAGGGATAGGCTTGATGCAGT TTTGGTTTTCCCTTCAATGCCTGAGGTAATGAGGCTTAACAAGTTGGGTTCTTTCAGTATGTCACAGCTTGGTCAATCAAAGAGTCCATTCTTCCAGTTG TTCAAGAAAAAGAAGCAAGGTGCGGGTTTTGCTGACAGTATGTTGAAGTTAGTGAGAACTTTGCCGAAGGTTTTGAAATATTTGCCTAGTGATAAGGCTC AAGATGCTAGGCTTTATATCTTGAGTTTGCAGTTTTGGCTTGGTGGGTCACCAGATAACTTGCAGAATTTCTTGAAAATGATATCTGGGTCTTATGTTCC TGCATTGAAAGGGAAAAAGATTGCGTATTCTGATCCAGTTTTGTTCTTGGATAGTGGAATTTGGCACCCTTTGGCTCCTTGTATGTATGAAGATGCGAAG GAGTATCTGAATTGGTATGGAACCAGGAGGGATGCTAATGAGAAGCTTAAAGACCCTAATGCACCAGTCATTGGGCTGGTTTTGCAAAGGAGTCATATTG TGACTGGTGATGAGAGTCACTATGTGGCTGTGATTATGGAGTTGGAGGCAAGAGGTGCTAAAGTGATACCAATTTTCGCTGGTGGACTTGACTTTTCTGG GCCTGTTGAGAGGTATTTGATCGATCCAGTTACAAAGAAACCAATGGTGAATTCAGTGATATCATTGACTGGTTTTGCTCTTGTTGGAGGTCCAGCAAGG CAGGATCATCCAAGAGCTATCGAGGCATTGAGCAAGCTTGATGTGCCTTATATTGTTGCATTGCCTTTGGTGTTTCAAACAACTGAGGAGTGGTTAAATA GTACTTTGGGGTTGCACCCAATTCAGGTGGCTTTGCAAGTTGCTCTTCCTGAGCTGGATGGTGGCATGGAGCCCATTGTTTTTGCCGGCCGGGATCCAAG AACAGGGAAATCACATGCTCTTCACAAAAGGGTGGAGCAGCTCTGCACGAGAGCAATCAGATGGGGTGAACTGAAAAGGAAATCAAAGACTGAGAAGAAG TTAGCAATCACTGTCTTCAGTTTTCCTCCAGACAAGGGGAATGTTGGGACAGCAGCCTACCTTAATGTCTTCTCCTCCATCTTCTCGGTTCTGAAAGAAC TAGAAAGAGATGGCTACAATGTTGAGGGCCTTCCAGAGACTTCAGAAGCCTTGATTGAAGACATACTCCATGATAAAGAGGCTCAATTTAGCAGCCCAAA TCTGAACATTGCTTACAAAATGGGTGTTCGAGAGTATCAAAGCCTTACTTCATATGCCACTGCATTGGAAGAAAACTGGGGCAAACCTCCTGGCAATTTG AATTCTGATGGAGAGAATCTCTTGGTATATGGAAAACAGTACGGTAATGTCTTCATCGGAGTCCAGCCCACCTTTGGTTATGAGGGTGATCCAATGCGGC TATTATTCTCCAAATCGGCTAGCCCACATCATGGATTTGCAGCTTATTACTCTTTCGTTGAGAAAATCTTCAAAGCAGATGCAGTTCTTCATTTTGGCAC ACATGGTTCACTTGAATTCATGCCAGGGAAGCAGGTGGGAATGAGCGATGCTTGTTTTCCTGACAGTCTCATTGGTAATATCCCCAACGTCTATTATTAT GCAGCTAATAACCCATCTGAAGCCACCATTGCAAAACGCCGCAGTTATGCAAATACTATTAGCTATTTGACCCCTCCAGCTGAAAATGCTGGGCTTTACA AGGGCCTGAAGCAGTTGAGTGAGCTTATCTCCTCATACCAATCCCTCAAAGACACAGGTCGTGGGCCACAGATTGTGAGCTCCATAATCAGTACAGCTAG GCAATGCAATCTTGACAAGGATGTCGAGCTTCCTGAAGAGGGGGAGGAGATCTCTGCAAAGGAGCGAGATCTTGTGGTTGGAAAGGTATACTCCAAGATC ATGGAGATTGAATCCCGGCTTTTGCCATGTGGGCTTCATGTCATTGGTGAACCTCCATCTGCAATGGAAGCTGTCGCAACCTTGGTCAATATTGCTGCAT TAGACCGTCCTGAAGATGAGATTTCATCGCTCCCATCAATATTAGCTGAAACTGTTGGACGAAACATAGAGGATGTATATAGAGAGAGTGACAAGGGAAT CTTGAAGGATGTAGAACTTCTTCGGAAAATAACTGAGGCCTCGCGTGGCGCCGTCTCTGCCTTTGTGCAGAAAACAACTAACAAAAAGGGTCAAGTTGTA GATGTTGCAGATAAGCTTAGCTCTATCCTCGGGTTTGGCATTAATGAACCATGGGTTGATTACTTGTCAAGCACAAAATTCTATCAGGCAGATAGGGATA AGCTGAGAACATTATTCCGGTTCCTAGGAGACTGTTTGAAACTTATAGTCGCTGACAATGAGTTGGGGAGTCTGAAACAAGCCTTGGAAGGCAAATATGT GGAGCCAGGGCCTGGTGGTGACCCAATCAGAAACCCAAAGGTGTTGCCAACTGGAAAGAACATCCACGCACTAGACCCACAATCCATTCCTACAACAGCA GCAATGCAGAGTGCAAAAGTTGTGGTGGACAGATTAATTGAGAGGCAGAAAGCTGACAATGGTGGGAAGTATCCTGAGACAGTTGCACTTGTATTGTGGG GAACTGATAATATCAAGACCTATGGTGAGTCCCTGGCTCAGGTATTGTGGATGATTGGAGTAATGCCAGTTGCTGATACCTTTGGTAGGGTTAACCGGGT GGAACTTGTAAGTCTTGAAGAACTTGGAAGGCCTAGGATTGATGTCGTCGTTAATTGCTCAGGGGTGTTTAGAGATCTCTTTATCAATCAGATGAACCTC CTCGACCGTGCAGTGAAAATGGTAGCTGAACTAGATGAGCCAGCTGATCAGAACTTTGTCAGGAAGCATGCTCTAGAACAAGCTGAAGCCCTTGGTGTTG ACATTCGAGAAGCAGCAACACGTATATTCTCTAATGCCTCGGGATCATACTCCTCAAACATAAACCTTGCAGTGGAGAATTCTTCTTGGAATGATGAGAA GCAGCTTCAAGACATGTACTTGAGCAGGAAGTCCTTTGCCTTTGATTGTGATGCCCCAGGTGCAGGCATGGCAGAGAAGAGAAAAGTTTTTGAGATGGCT CTTAGCACAGCGGAAGCCACCTTCCAAAATCTTGATTCTTCAGAAATCTCACTCACCGATGTGAGCCACTATTTTGACTCAGACCCCACAAACTTGGTGC AGAACTTGAGGAAGGATAAGAAGAAGCCTAATGCTTACATTGCAGACACAACAACAGCAAATGCTCAGGTACGTACTCTTTCAGAGACTGTGCGACTCGA TGCTCGAACCAAATTGTTGAATCCTAAGTGGTATGAAGGAATGCTGTCTACTGGTTATGAGGGTGTTCGTGAAATTGAGAAGCGGCTTACAAACACTGTT GGCTGGAGTGCAACTTCAGGCCAAGTCGACAACTGGGTCTATGAAGAAGCTAACTCAACTTTCATCCAAGATGAGGAGATGCTGAACAAACTCATGAGCA CAAACCCAAATTCATTTAGGAAGATGTTGCAGACCTTTTTAGAGGCCAATGGTCGTGGGTACTGGGAAACTTCACAGGATAACATTGAGAAGCTGAGACA GTTGTACTCAGAAGTTGAAGACAAGATTGAGGGTATTGATCGGTAA
AA sequence Show only first row Show all	>Potri.006G051100.1 pacid=42767427 polypeptide=Potri.006G051100.1.p locus=Potri.006G051100 ID=Potri.006G051100.1.v4.1 annot-version=v4.1 MASLVSSPFTLQSIKPDQLSSPSQKHYFLHSFVPRKINQTSLKSSLKVKCAAIGNGLFTQTTQEVRRIVPENNQNLPTVKIVYVVLEAQYQSSLTAAVQA LNKTSKDASYEVVGYLVEELRDASTYKTFCKDLEDANIFIGSLIFVEELALKVKTAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQL FKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGKKIAYSDPVLFLDSGIWHPLAPCMYEDAK EYLNWYGTRRDANEKLKDPNAPVIGLVLQRSHIVTGDESHYVAVIMELEARGAKVIPIFAGGLDFSGPVERYLIDPVTKKPMVNSVISLTGFALVGGPAR QDHPRAIEALSKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPRTGKSHALHKRVEQLCTRAIRWGELKRKSKTEKK LAITVFSFPPDKGNVGTAAYLNVFSSIFSVLKELERDGYNVEGLPETSEALIEDILHDKEAQFSSPNLNIAYKMGVREYQSLTSYATALEENWGKPPGNL NSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNVYYY AANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTARQCNLDKDVELPEEGEEISAKERDLVVGKVYSKI MEIESRLLPCGLHVIGEPPSAMEAVATLVNIAALDRPEDEISSLPSILAETVGRNIEDVYRESDKGILKDVELLRKITEASRGAVSAFVQKTTNKKGQVV DVADKLSSILGFGINEPWVDYLSSTKFYQADRDKLRTLFRFLGDCLKLIVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQSIPTTA AMQSAKVVVDRLIERQKADNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVMPVADTFGRVNRVELVSLEELGRPRIDVVVNCSGVFRDLFINQMNL LDRAVKMVAELDEPADQNFVRKHALEQAEALGVDIREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMAEKRKVFEMA LSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDKKKPNAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTV GWSATSGQVDNWVYEEANSTFIQDEEMLNKLMSTNPNSFRKMLQTFLEANGRGYWETSQDNIEKLRQLYSEVEDKIEGIDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Potri.006G051100 [exp]	0	1	Pt-GUN5.1
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Potri.019G089700 [exp]	1.00	0.9777
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	2.82	0.9653
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.010G130800 [exp]	4.24	0.9643
AT3G23700			Nucleic acid-binding proteins ...		Potri.014G148500 [exp]	4.47	0.9748
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	10.09	0.9399
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Potri.009G080800 [exp]	10.39	0.9625
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.009G000100 [exp]	11.22	0.9511
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	12.12	0.9639
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Potri.010G254700 [exp]	14.31	0.9653	SHMT7,SHM1.3
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	14.69	0.9637

Compare expression of checked genes

Potri.006G051100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.