Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60080 434 / 8e-155 3'-5'-exoribonuclease family protein (.1) AT3G07750 82 / 5e-18 3'-5'-exoribonuclease family protein (.1.2) AT3G60500 83 / 1e-17 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT3G12990 81 / 3e-17 RRP45A ribonuclease PH45A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G055600 [exp] 551 / 0 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1) Potri.009G047500 [exp] 85 / 3e-18 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.001G253200 [exp] 75 / 8e-15 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021789 [exp] 494 / 4e-178 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10034605 [exp] 479 / 6e-172 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence Show only first row Show all	>Potri.006G051200.2 pacid=42769678 polypeptide=Potri.006G051200.2.p locus=Potri.006G051200 ID=Potri.006G051200.2.v4.1 annot-version=v4.1 ATGGGGGTGCCAGATGCCTCAGGGGACTTGTCATCCGAGATGGAGGTGGATGCTTTCAGACGCCTCTTCCCTCTTCGCTATTTTGAGCGTCATCTCTCAG AATCTATACGCCCCGATGCGAGGCCTCTTGGAAGAGCTAGAGATACAACATTAGCCCTTGGGGCTGTTGCATCTGCTCATGGGTCAGCATTGGCAAAGAT CGGTTCAACTACCATGTTGGCTGCCATAAAAATGGAAGTGATGACCCCTTCAACAGAGTCACCGGAAGAGGGCTCCATTGCTATTGATTTCCACATGCCC CCAATCTGTTCTCCAATTGTTAGACCTGGTAGGCCTGCCGAGGCTGCACCTGTGATATCAAAGCAATTATCCGATACCATATCAAGCTCTGGCATGATTA ATCTAAAGGAACTGTCCCTGGTCAGTGGAAAAGCTGCCTGGATGGCGTACCTGGACATTTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCACT ACTCTCAGCTGTCGGTGCCTTCTCTCATTTGCAAATCCCCATAGTTTCCCTAAATGATGATGGAAAAATAGTACTCGTATCGGAGGAAGATGATGGAACA AAATTGGAGGAGGAGCCTGTCAACAAGGAGAAGAGGAAGCTCACACTGAGCAGCATTCCATTTTCATTGACATGCATACTTCACAAGAACTACATCTTGG CAGACCCAACTGCAGAAGAAGAGTCTATTATGGAAACTCTTGTAACGGTGGTTTTGGATTCATCTTCCAGACTCGTGTCTTTTTACAAGCCAGGTGGACC AGTTCTTGCCCAGACATCAGCTGTCCAGGATTGTGTTGCATTGACTAGGCAGAGAGTGAAGGAACTTCAAGACATTTTAGATGAGACCATTTCTGGTATG GAGATTGACTAA
AA sequence Show only first row Show all	>Potri.006G051200.2 pacid=42769678 polypeptide=Potri.006G051200.2.p locus=Potri.006G051200 ID=Potri.006G051200.2.v4.1 annot-version=v4.1 MGVPDASGDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMP PICSPIVRPGRPAEAAPVISKQLSDTISSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHLQIPIVSLNDDGKIVLVSEEDDGT KLEEEPVNKEKRKLTLSSIPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQRVKELQDILDETISGM EID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60080			3'-5'-exoribonuclease family p...		Potri.006G051200 [exp]	0	1
AT5G40530			S-adenosyl-L-methionine-depend...		Potri.001G344000 [exp]	3.00	0.8118
AT3G21465			unknown protein		Potri.008G205300 [exp]	4.00	0.8458
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319900 [exp]	4.47	0.8057
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	4.89	0.8541	Pt-RPL21.5
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	7.34	0.8454
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	8.48	0.7964
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	9.89	0.8010
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	10.00	0.8250	Pt-TUFA.3
AT5G11630			unknown protein		Potri.006G237800 [exp]	11.74	0.8233
AT2G26200			S-adenosyl-L-methionine-depend...		Potri.006G225600 [exp]	12.24	0.7536

Compare expression of checked genes

Potri.006G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.