Plant FIBer expression Database

Potri.006G052100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41830 1110 / 0 Uncharacterized protein (.1)
AT5G21080 994 / 0 Uncharacterized protein (.1)
AT1G05960 537 / 3e-175 ARM repeat superfamily protein (.1.2)
AT5G26850 536 / 6e-175 Uncharacterized protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G055100
[exp]
1768 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1)
Potri.007G128000
[exp]
833 / 0 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.013G008500
[exp]
555 / 0 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026298
[exp]
1200 / 0 AT2G41830 1083 / 0.0 Uncharacterized protein (.1)
Lus10042372
[exp]
892 / 0 AT2G41830 840 / 0.0 Uncharacterized protein (.1)
Lus10001161
[exp]
729 / 0 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10006583
[exp]
715 / 0 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10019717
[exp]
639 / 0 AT2G41830 1012 / 0.0 Uncharacterized protein (.1)
Lus10029842
[exp]
519 / 5e-168 AT5G26850 1115 / 0.0 Uncharacterized protein (.1.2.3.4)
Lus10020697
[exp]
507 / 2e-163 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4)
Lus10016400
[exp]
506 / 1e-162 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G052100.3 pacid=42768557 polypeptide=Potri.006G052100.3.p locus=Potri.006G052100 ID=Potri.006G052100.3.v4.1 annot-version=v4.1
ATGAGCGCGATTTCGGGTGTAATTTCAAGGCAAGTAATGCCTGCATGTGGCAGCCTTTGTTTCTTTTGCCCTGCGATGAGGGCAAGGTCCAGACAACCTG
TCAAGAGATATAAGAAGCTGATTGCAGATATTTTTCCTCGAAACCAGGAGGAAGGACCTAATGATCGGAAGATTGGAAAACTATGTGAATATGCTGCTAA
AAATCCTCTCCGTATCCCGAAGATCACGAGCTCTCTTGAGCAAAGGTGTTACAAGGAACTGAGAATCGAGAACTTTCAATCTGCAAAAATTGTGATGTGC
ATTTACAGGAAATTGTTGATCACTTGCAAGGAGCAAATGCCTCTGTTTGCAAGTAGCTTACTGAGCATCATTAGTACTCTGTTGGATCAAACACGGCAGG
ATGACATTCAAGTTATAGGATGCGAGACTCTGTTTGATTTTGTAAATAACCAGAATGACGGAACTTTCATGTTTAACTTAGAAGGATTTATTCCAAAACT
CTGTCAGTTTACTCAAGAAGAGGGAAAGGATGAAAGGGAAAAAAGTCTATGTGCAGCTGGGCTGCAAGCCCTTTCTTCTATGATTTGGTTTATGGGTCAA
CACTCTCATATTTCAGTGGAGTTCGACAATATAGTTTCAGTTGTCTTGGAAAATTATGGAGGTCCTAAGAGGATTTCAGAGAACCTCGATACTGACAAAC
CAGGTCCTCAGAATCGGTGGGTGCAAGAAGTGCTGAAAAATGAGGGGCTTGCTACTCCTTTGCCAGAGGTCATTACAAGGGTTCCTTCTTGGAGGACAAT
TGTGAATGAAAGAGGCGAAGTAAATATGACAGCAGAAGAGGCCCGTAACCCCTGCTTTTGGTCCAGGGTTTGCTTGCATAACATGGCGAAGTTAGGGAAG
GAGGCTACAACAATTCGGCGTGTTCTCGAATCTTTGTTCCGATACTTCGATAATGGAAATTTATGGTCTCCTGAAAATGGTCTTGCCTTCCCAGTCTTAA
AGGATATGCAGTTTTTAATGGATAATTCTGGGCAACATACACATGTTTTGCTGTCCATATTGATTAAGCATCTCGATCACAAAAATGTCCTTAAAGAACC
CAGCATGCAGCTCGATATTGTTGAGGTTACCACTGCCCTTGCTGAACATGCCAAGGTTGACCCTTCTCTGGCAATAATTGGTGCAGTAAGTGATGTCATG
CGTCATTTGCGGAAAAGCATACACTGCTCACTTGATGATGCCAATCTGGGAGCTGAAATAAAAAACTGGAACAAAAACTTTAGAGAAGTGGTAGATAAAT
GCCTTACTGAGTTAGCATATAAGGTTGGAGATGCAGGCCCGATCCTTGACATTATGGCTGTGATGTTGGAGAACATCTCGAATGTTACTGTTATAGCTAG
AACTACGATTTCCACTGTTTATCGTACAGCTCAAATTGTTGCCTCATTACCAAATTTGTCATATCAAAACAAGTCATTCCCTGAAACTTTATTTCATCAG
TTACTTCCAGCTATGGTCCATCCTGACCATGAAACACGAGTTGGAGCTCACCGCATCTTTTCTGTTGTTCTTGTGCCATCTTCAGTTTCGCCTCGTCCAT
CCTCAACTAATCCTGGGTCAAATAAAGGCTCTGATCTTTCACGGACTCTATCAAGAACTGTCTCTGTCTTTTCTTCTTCGGCTGCTCTTTTTGACAAGCT
AAGAAGGGATAAAACTTCCACCAGGGAAAATGCCTGTCAAGACAACAAAAATAATGTCCTTGAAGGTGAACAAATCAATAATGGGATCCTTGCTAGATTG
AAGTCATCTACAAGTCGAGTACACAGCATGAAAAATTCTAATGTACCCTCAACATCAGATGAGAATCCCGTGAACATCTTAAATAAGGAAACTGAGGTTG
GTTCTCTAAGGTTGAGTAGCCGCCAGATCTCTCTCTTGCTTTCATCGATTTGGACACAGTCCATTTCTCCTGCAAATACACCCCAAAACTATGAAGCAAT
TGCTCATACATATAGCCTGGTATTGCTATTTTCTCGAACCAAGAATTCTAGTGATGAGGCTTTGATTAGAAGTTTTCAGCTTGCATTTTCCTTGAGAAAC
ATTGCTCTTAAGCAAGAAGAGTCACTCTCACCATCACGCCGCAGGTCCCTCTTTACTCTGGCAACTTCGATGATTCTTTTTTCATCAAAAGCTTTCAATA
TTATTCCGCTTATTTATTGTACCAAGGTGGTGCTTACAGAAAAAATGGTTGATCCATATTTGCGCTTAGTTGAAGACCGCAAGTTAGAGGCTGTGGCTAC
AGATTCTGGCCACCCCGCAATTGTTTATGGATCTAAGGACGATGATAGTTCAGCTTTAAAATCCCTTTCAGAGATAGATGTTACTGGGAACCAAAGCAGG
GAATTCTTTGCTGCTGAGATTGCTAAGAGCTTGGCAAATTTGGCAAATTCTGAAGTATCTGCTAAACGGGAGAAGCTCCTCGACGAATTCTTACCTGATG
ATGTGTGTCCTTTGGGAGCCCAGTTGTTTATGGATACTCCAAATCAAATAGATCAAGTTGATTCCAAAGATAACTCTCTTGTGGAGGGCACTCCACTTTT
TACAGTAGATGATGTTTTTCTAGATTCATTGGAAGGTCAAACCACTCAGACCACAGAAATTGTCTTCCAAGCCACCAACCTGTTGAGCGTCAATCAACTT
CTAGAATCAGTCTTAGAGACGACACACCAAGTTGGACGATTGTCTGTAACTGCACCTGATGTGTCTTATAAGGAAATGGCTCACCATTGCGAAACACTTC
AGATGGGAAAGCAACAGAAGATGTCTCATGTGATGAGTGTCCAATTGAGACAGGAGAGTTTGATGAATGTCCCCTTTCAGAAATATGATGACAAGGCGAG
GAAGGCTACCAATCCTTTCCTCGACCAAAATCTTATTGCAAGCCCACAAATACCGCCAATTGGCACTGTTCAAATGCAGTGCGCGACAGTGTATCAACAT
CAGCCTAACTTCTTCAGGCTACCAGCATCAAGCCCCTTTGATAACTTCCTAAAAGCTGCTGGCTGTTGA
AA sequence
>Potri.006G052100.3 pacid=42768557 polypeptide=Potri.006G052100.3.p locus=Potri.006G052100 ID=Potri.006G052100.3.v4.1 annot-version=v4.1
MSAISGVISRQVMPACGSLCFFCPAMRARSRQPVKRYKKLIADIFPRNQEEGPNDRKIGKLCEYAAKNPLRIPKITSSLEQRCYKELRIENFQSAKIVMC
IYRKLLITCKEQMPLFASSLLSIISTLLDQTRQDDIQVIGCETLFDFVNNQNDGTFMFNLEGFIPKLCQFTQEEGKDEREKSLCAAGLQALSSMIWFMGQ
HSHISVEFDNIVSVVLENYGGPKRISENLDTDKPGPQNRWVQEVLKNEGLATPLPEVITRVPSWRTIVNERGEVNMTAEEARNPCFWSRVCLHNMAKLGK
EATTIRRVLESLFRYFDNGNLWSPENGLAFPVLKDMQFLMDNSGQHTHVLLSILIKHLDHKNVLKEPSMQLDIVEVTTALAEHAKVDPSLAIIGAVSDVM
RHLRKSIHCSLDDANLGAEIKNWNKNFREVVDKCLTELAYKVGDAGPILDIMAVMLENISNVTVIARTTISTVYRTAQIVASLPNLSYQNKSFPETLFHQ
LLPAMVHPDHETRVGAHRIFSVVLVPSSVSPRPSSTNPGSNKGSDLSRTLSRTVSVFSSSAALFDKLRRDKTSTRENACQDNKNNVLEGEQINNGILARL
KSSTSRVHSMKNSNVPSTSDENPVNILNKETEVGSLRLSSRQISLLLSSIWTQSISPANTPQNYEAIAHTYSLVLLFSRTKNSSDEALIRSFQLAFSLRN
IALKQEESLSPSRRRSLFTLATSMILFSSKAFNIIPLIYCTKVVLTEKMVDPYLRLVEDRKLEAVATDSGHPAIVYGSKDDDSSALKSLSEIDVTGNQSR
EFFAAEIAKSLANLANSEVSAKREKLLDEFLPDDVCPLGAQLFMDTPNQIDQVDSKDNSLVEGTPLFTVDDVFLDSLEGQTTQTTEIVFQATNLLSVNQL
LESVLETTHQVGRLSVTAPDVSYKEMAHHCETLQMGKQQKMSHVMSVQLRQESLMNVPFQKYDDKARKATNPFLDQNLIASPQIPPIGTVQMQCATVYQH
QPNFFRLPASSPFDNFLKAAGC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41830 Uncharacterized protein (.1) Potri.006G052100
[exp]
0 1
AT3G08490 unknown protein Potri.009G061300
[exp]
1.41 0.9165
AT2G29050 ATRBL1 RHOMBOID-like 1 (.1.2) Potri.001G241300
[exp]
2.23 0.9193
AT1G32190 alpha/beta-Hydrolases superfam... Potri.001G136400
[exp]
3.46 0.8974
AT3G45850 P-loop containing nucleoside t... Potri.016G082400
[exp]
4.35 0.8593
AT5G48740 Leucine-rich repeat protein ki... Potri.002G242700
[exp]
5.29 0.8935
AT1G14185 Glucose-methanol-choline (GMC)... Potri.010G168100
[exp]
6.63 0.8754
AT3G08490 unknown protein Potri.001G267200
[exp]
6.70 0.8760
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.015G104700
[exp]
7.74 0.9049
AT1G20670 DNA-binding bromodomain-contai... Potri.006G112000
[exp]
8.18 0.8229 BRD919
AT3G25590 unknown protein Potri.008G109600
[exp]
8.48 0.8603

Potri.006G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.