Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07970 449 / 1e-155 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT3G57510 442 / 2e-153 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 427 / 3e-147 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G80170 350 / 4e-117 Pectin lyase-like superfamily protein (.1) AT1G23460 327 / 7e-108 Pectin lyase-like superfamily protein (.1) AT1G70500 327 / 9e-108 Pectin lyase-like superfamily protein (.1) AT2G43890 298 / 2e-97 Pectin lyase-like superfamily protein (.1) AT1G56710 292 / 1e-94 Pectin lyase-like superfamily protein (.1) AT1G05650 283 / 1e-91 Pectin lyase-like superfamily protein (.1) AT1G05660 283 / 2e-91 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054800 [exp] 680 / 0 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.009G060400 [exp] 525 / 0 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 379 / 3e-128 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 341 / 2e-113 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 335 / 8e-111 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 331 / 4e-109 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 298 / 3e-97 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 299 / 2e-96 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 297 / 5e-96 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042371 [exp] 540 / 0 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 521 / 0 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 485 / 2e-169 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 446 / 2e-154 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 332 / 9e-110 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 316 / 5e-103 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 284 / 1e-91 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 281 / 2e-90 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10008343 [exp] 280 / 5e-90 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 278 / 3e-89 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.006G052700.1 pacid=42770097 polypeptide=Potri.006G052700.1.p locus=Potri.006G052700 ID=Potri.006G052700.1.v4.1 annot-version=v4.1 ATGGCCTTACGAGGAGCACTGATTTTGTACTCATTCTTCATGATCTTCCTCTCCATTATTTCATCCTATAATTGTTTGCAAGAGGACCCACTTAATAATT ATCTTGAAGAAGAAGCATCAGGCTATGATTCTCGAGCTTACCCTTCGCACTATAGCACGATTAGCGAGGATGGCGAGTTTAAGAACTTAGTCAAGCTGAG AAGTGATGTTTTAATTAGTTTGCAAGCGTTTAGCAAAGTGGGTGGCAAATCAACTTCAGTAAGAACAGTTAATGTAAAGGATTTTGGAGCTAAAGCTGTT GGAGGAGATGACACAGAGACAATTGAAAAGGCTTGGAAGGAAGCTTGTTCTTCCTCTGAAGGAGCTATTGTTGTTGTGCCCCGCTATACATATCGTCTTA AGCCGATTACATTCCAGGGTCCTTGCAAATCTAATATCACATTACAGGTAAATGGAGTCATTGAAGCATCTGATGATCTATCGGACTACAAAGAAGATGG CAGACATTGGCTTGTCTTTGATAGTATTCAGAATCTGCAAGTTGAAGGTGGTGGAACTATTGATGGAAACGGGAAGATATGGTGGCAAAACTCATGCAAA GTCGATAAAAATCTTCCTTGCAAAGATGCGCCTACGGCAATAACCTTCTATGAATGCCAGAATTTGGTTGTGAAGAACCTCAAAATCCAAAATGCACAAC AAATGCATGTTTCTTTCGAGAAAAGCAATGGTGTTCAAGTCTCCAACCTCACAGTAACCTCACCGGAGGGAAGCCCTAACACTGATGGAATCCATGTCGC AGGCACCCAAAACATTCAGATTACTGATTCAGTCATAGGAACAGGTGATGATTGTATCTCCATTGTAAGTGGATCCCAAAATGTTCAAGCCTCGGACATA ACTTGTGGACCAGGTCATGGAATCAGTATTGGAAGCTTGGGAGTTCATAATTCAGAAGACTACGTTTCAGGAGTTACTGTCAATGGTGCCAAGTTTTCTG GTACCACAAATGGTGTTAGGATCAAAACATGGCAGGGAGGGTCTGGAAGTGCACGCAACATCGAGTTTCTGAATATTGAAATGAACAATGTCACCAACCC CATTATAATAGATCAAAACTACTGTGACCAAGATGAACCATGCGAAGAACAGAGGTCAGCAGTCCAAGTGAAAAATGTGGTGTACAAGAACATAAAGGGG ACTGGTGCTTCTGAGGTGGCTATCAAATTTGATTGCAGCAAGACTTATCCATGCGAAGGGATTCTGATGCACGATGTTAATCTTGAAAGAGAAGGAGCGG GAACAGCCATAGCTTCGTGCAACAATGTCAAATTAGCTGAATTGGGAGTTGTTTCTCCAAAATGTCCTTGA
AA sequence Show only first row Show all	>Potri.006G052700.1 pacid=42770097 polypeptide=Potri.006G052700.1.p locus=Potri.006G052700 ID=Potri.006G052700.1.v4.1 annot-version=v4.1 MALRGALILYSFFMIFLSIISSYNCLQEDPLNNYLEEEASGYDSRAYPSHYSTISEDGEFKNLVKLRSDVLISLQAFSKVGGKSTSVRTVNVKDFGAKAV GGDDTETIEKAWKEACSSSEGAIVVVPRYTYRLKPITFQGPCKSNITLQVNGVIEASDDLSDYKEDGRHWLVFDSIQNLQVEGGGTIDGNGKIWWQNSCK VDKNLPCKDAPTAITFYECQNLVVKNLKIQNAQQMHVSFEKSNGVQVSNLTVTSPEGSPNTDGIHVAGTQNIQITDSVIGTGDDCISIVSGSQNVQASDI TCGPGHGISIGSLGVHNSEDYVSGVTVNGAKFSGTTNGVRIKTWQGGSGSARNIEFLNIEMNNVTNPIIIDQNYCDQDEPCEEQRSAVQVKNVVYKNIKG TGASEVAIKFDCSKTYPCEGILMHDVNLEREGAGTAIASCNNVKLAELGVVSPKCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.006G052700 [exp]	0	1
					Potri.001G410477 [exp]	1.73	0.9572
AT4G10150			RING/U-box superfamily protein...		Potri.014G076800 [exp]	2.00	0.9536
AT5G43150			unknown protein		Potri.001G037400 [exp]	5.65	0.8788
AT1G27620			HXXXD-type acyl-transferase fa...		Potri.005G230900 [exp]	5.65	0.8995
AT3G25280			Major facilitator superfamily ...		Potri.002G249100 [exp]	7.14	0.8980
AT3G05327			Cyclin family protein (.1)		Potri.005G033600 [exp]	8.94	0.9369
AT3G49060			U-box domain-containing protei...		Potri.012G143100 [exp]	9.48	0.8230
AT2G01910		ATMAP65-6	Microtubule associated protein...		Potri.008G139700 [exp]	11.09	0.8630
AT4G27745			Yippee family putative zinc-bi...		Potri.015G009200 [exp]	11.83	0.8997
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	12.00	0.8928	COMTL3,Pt-GSI.2

Compare expression of checked genes

Potri.006G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.