Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57520 1290 / 0 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT1G55740 905 / 0 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1) AT5G20250 877 / 0 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT5G40390 531 / 1e-178 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT4G01970 307 / 5e-92 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054700 [exp] 1462 / 0 AT3G57520 1278 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.011G166700 [exp] 972 / 0 AT1G55740 1154 / 0.0 raffinose synthase 1, seed imbibition 1 (.1) Potri.006G065700 [exp] 913 / 0 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.018G126400 [exp] 905 / 0 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.015G086400 [exp] 797 / 0 AT3G57520 827 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.016G002300 [exp] 755 / 0 AT3G57520 758 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.017G036700 [exp] 540 / 0 AT5G40390 1118 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.T124908 [exp] 540 / 0 AT5G40390 1055 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.004G207900 [exp] 535 / 2e-180 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007537 [exp] 1315 / 0 AT3G57520 1235 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Lus10017516 [exp] 858 / 0 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Lus10027679 [exp] 523 / 5e-175 AT5G40390 1040 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022240 [exp] 312 / 8e-98 AT5G40390 744 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022241 [exp] 204 / 1e-59 AT5G40390 342 / 2e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10008771 [exp] 157 / 2e-43 AT5G40390 339 / 1e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10014902 [exp] 52 / 7e-07 AT5G55500 254 / 2e-81 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1) Lus10041370 [exp] 44 / 0.0001 AT5G40390 71 / 8e-15 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039946 [exp] 0 / 1 AT5G40390 123 / 9e-38 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039945 [exp] 0 / 1 AT5G40390 164 / 8e-58 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF05691 [poplar] [flax] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Potri.006G052800.12 pacid=42768326 polypeptide=Potri.006G052800.12.p locus=Potri.006G052800 ID=Potri.006G052800.12.v4.1 annot-version=v4.1 ATGACGGTGACACCAAAGATTTCAATCAATGATGGGAACCTTGTGGTTCATGGGAAGACAATTTTAACTGGAGTTCCTGATAACATTGTTCTGACTCCTG GCTCTGGTGTTGGACTTGTTGCTGGTGCTTTTATTGGTGCTACTGCTTCTCATAACAAAAGTCTCCATGTTTTTCCTGTTGGGGGTTTAGAGGATCTTCG ATTTATGTGTTGCTTCCGATTCAAGTTATGGTGGATGACCCAGAGAATGGGGAAGTGTGGGAAAGATATTCCACTGGAGACTCAATTCATGCTAGTGGAA AGCAAGGGTGGTGGTGAAGAAGTTGATCAAGATGATGCACAGACAATCTACACTGTTTTCCTTCCCCTGCTTGAAGGCCAGTTCCGTGCTGTACTGCAAG GCAACGACAGGAATGAGATGGAGATTTGCCTTGAGAGCGGCGATAGTGCTGTTGAAACCAACCAAGGCCTTCACCTGGTCTACATGCATGCTGGGACCAA TCCTTTTGAAGTCATAAACCAAGCTGTAAAGGCTGTGGAAAAACATTTGCAAACCTTTCTTCATCGGGAGAAGAAAAAGATGCCCTCATTTCTTGACTGG TTTGGCTGGTGTACTTGGGATGCCTTTTACACAGATGTCACCGCTGAGGGTGTTGAGGAAGGCCTTAAGAGTCTGTCAGAGGGAGGGACTCCTCCACGAT TTTTGATCATCGATGATGGTTGGCAACAGATTGAAAATAAAGCAAAGGAGGATGCTAATGCTGTTGTACAAGAAGGAGCACAATTTGCAAGTAGGCTTAC TGGAATAAAGGAGAACTCTAAATTCCAGAAGAATGGTGAAAAGAATGAGCAGGCCATAGGACTGAAGCTTGTTGTGGACAATGCCAAGCAACAACACAAT GTGAAGTATGTTTATGCATGGCATGCTTTGGCTGGTTATTGGGGTGGAGTTAAACCAGCAGCTGCTGGTATGGAGCATTATGACACTGCCCTGGCTTATC CAGTTCAATCTCCTGGCGTGTTAGGCAACCAACCTGATATTGTTATGGACAGCCTAGCAGTTCATGGCCTTGGTTTGGTGCATCCAAAGAAGGTCTTCAA CTTCTACAATGAGCTCCATGCCTACTTAGCATCGTGTGGAGTTGATGGAGTGAAAGTCGATGTTCAGAACATTATTGAAACCCTTGGTGCTGGCCATGGT GGAAGAGTTTCTCTGACTCGTAGCTATCAACAAGCACTTGAGGCTTCAATTGCACGAAACTTCCCTGACAATGGATGTATTTCCTGCATGTGTCATAACA CTGATGGAATCTATAGCACCAAGCAGACAGCTGTAGTGAGAGCTTCTGATGATTTCTATCCTCGGGATCCTGCTTCCCACACCATCCATATCTCCTCTGT GGCTTACAACACTCTATTCCTTGGAGAATTTATGCAACCAGACTGGGATATGTTCCATAGTTTACACCCGGCTGCAGATTATCATGGGGCAGCTCGTGCT ATTGGTGGATGTGCAATCTATGTCAGTGATAAGCCAGGCAACCACAACTTTGATCTATTGAAGAAGCTGGTCCTCCCTGATGGATCTGTCCTTCGTGCTC AACTTCCAGGCAGGCCAACACGTGACAGCCTCTTTGTTGATCCAGCAAGAGATGGAATGAGCTTACTCAAGGTCTGGAATGTGAACAAATGCACTGGTGT GGTTGGTGTCTTCAACTGCCAAGGTGCGGGTTGGTGCAAGATTGAGAAGAAGACCCGCATTCATGACACAACTCCGGGGACCCTCACTGCTTCTGTTCGT GCCAGCGACGTTGACTGCATTGCTCAAGTTGCTGGTGCAAATTGGGATGGGGAGACCGTGGTCTATGCCTACAAATCAGGGGAGTTGGTTCGGTTGCCTA AAGGTGCTTCAATGCCAGTGACATTGAAAGTTCTTGAATACGAACTCTTCCATTTCTGTCCTATCAATGAGATCACTTCCAACATTTCATTTGCACCAAT AGGCTTGCTTGACATGTTCAACACAGGAGGTGCTGTGGAGCAGGTTGAAATTCAAATGGCTTCTGACAAGTCACCGGAGCACTTTGATGGTGAAGTCTCC TCAGAGCTGACCACTTCTCTCAGTGAGAGCCGGTCTCCAACTGCAACCATTGCGCTGAAAGTCAGGGGGTGTGGAAGGTTTGGTGCTTACTCTTCCCAAA GACCTCTGAAATGCACTGTGGGCAATGTTTTCACCGACTTCAATTATGACTCTGCCACTGGGCTAGTTACCCTGACTTTGCCTGTACCAGTAGTGGAAAT GTACAGATGGCCTGTGGAGATACAGGTTTAA
AA sequence Show only first row Show all	>Potri.006G052800.12 pacid=42768326 polypeptide=Potri.006G052800.12.p locus=Potri.006G052800 ID=Potri.006G052800.12.v4.1 annot-version=v4.1 MTVTPKISINDGNLVVHGKTILTGVPDNIVLTPGSGVGLVAGAFIGATASHNKSLHVFPVGGLEDLRFMCCFRFKLWWMTQRMGKCGKDIPLETQFMLVE SKGGGEEVDQDDAQTIYTVFLPLLEGQFRAVLQGNDRNEMEICLESGDSAVETNQGLHLVYMHAGTNPFEVINQAVKAVEKHLQTFLHREKKKMPSFLDW FGWCTWDAFYTDVTAEGVEEGLKSLSEGGTPPRFLIIDDGWQQIENKAKEDANAVVQEGAQFASRLTGIKENSKFQKNGEKNEQAIGLKLVVDNAKQQHN VKYVYAWHALAGYWGGVKPAAAGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHG GRVSLTRSYQQALEASIARNFPDNGCISCMCHNTDGIYSTKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAADYHGAARA IGGCAIYVSDKPGNHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDGMSLLKVWNVNKCTGVVGVFNCQGAGWCKIEKKTRIHDTTPGTLTASVR ASDVDCIAQVAGANWDGETVVYAYKSGELVRLPKGASMPVTLKVLEYELFHFCPINEITSNISFAPIGLLDMFNTGGAVEQVEIQMASDKSPEHFDGEVS SELTTSLSESRSPTATIALKVRGCGRFGAYSSQRPLKCTVGNVFTDFNYDSATGLVTLTLPVPVVEMYRWPVEIQV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.006G052800 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G084800 [exp]	1.73	0.9193	IFS1.47,CYP736A4v1
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	2.82	0.8829
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.017G036700 [exp]	5.74	0.8834	Pt-RFS.3
AT3G55410			2-oxoglutarate dehydrogenase, ...		Potri.008G051600 [exp]	6.92	0.8480
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G048200 [exp]	12.32	0.8906	ZOG1.17
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Potri.009G011700 [exp]	17.54	0.8287	IVD.1
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.001G470000 [exp]	17.74	0.8776
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.001G171600 [exp]	20.32	0.8761
AT5G24080			Protein kinase superfamily pro...		Potri.015G026300 [exp]	22.20	0.8196
AT5G18130			unknown protein		Potri.013G057200 [exp]	22.44	0.8602

Compare expression of checked genes

Potri.006G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.