Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13650 1123 / 0 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 443 / 3e-147 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G08650 149 / 1e-37 Small GTP-binding protein (.1) AT5G39900 143 / 1e-35 Small GTP-binding protein (.1) AT2G45030 107 / 7e-24 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 107 / 7e-24 Translation elongation factor EFG/EF2 protein (.1) AT3G22980 106 / 2e-23 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 100 / 1e-21 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 92 / 6e-19 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G62750 91 / 1e-18 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123700 [exp] 451 / 3e-150 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.001G305300 [exp] 143 / 1e-35 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 140 / 1e-34 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.003G109900 [exp] 101 / 5e-22 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.009G152500 [exp] 101 / 6e-22 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.001G123600 [exp] 100 / 8e-22 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.005G098100 [exp] 99 / 2e-21 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 99 / 4e-21 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 99 / 4e-21 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007535 [exp] 1135 / 0 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10012200 [exp] 1042 / 0 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10002179 [exp] 416 / 2e-136 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10039896 [exp] 398 / 4e-130 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10035968 [exp] 148 / 3e-37 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 147 / 8e-37 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 145 / 3e-36 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10039840 [exp] 127 / 3e-30 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10025694 [exp] 119 / 8e-28 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1) Lus10018604 [exp] 106 / 1e-23 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Potri.006G053000.1 pacid=42770644 polypeptide=Potri.006G053000.1.p locus=Potri.006G053000 ID=Potri.006G053000.1.v4.1 annot-version=v4.1 ATGGAAATGGCAATTAACATCCACAGCAGCAGCAGCTCCTCCTTCTCTCTTATAAACCCTAAACCACCTCTGCTTACCAAACAACTCTTCGGTAGCTCCT TCACCTTATCTTCCTTCCCAAACACCTCCAAAACGACATCAACCTCATCACTCCGCTGCCGCCGTTCTCGTTTTTCATTTCACTCTCCGATAAAATGCTC CGTTTCCACGGAAGCCTCCACCACCGAGAAAAGGAGCCAGATGATGAGAAGAGGAGACATACGGAATATAGCAATAGTAGCTCATGTTGATCATGGTAAA ACTACCTTAGTTGATGCCATGTTAAAGCAATCTAAGGTGTTTCGCGATAATCAATTTGTACAGGAGAGAATTATGGACTCCAATGATATAGAACGCGAAA GAGGAATTACAATTTTGAGCAAAAATACTTCAATTACTTATAAGGATACAAAAATCAATATAATTGATACTCCAGGTCACTCTGATTTTGGTGGTGAAGT TGAAAGGATTCTTAATATGGTCGAAGGAGTTCTACTCGTGGTGGATTCTGTTGAGGGGCCGATGCCGCAGACGAGGTTTGTTTTGAAGAAGGCTTTGGAG TTTGGTCATGCTGTTGTTGTTGTTGTTAATAAGATTGATAGACCGTCTGCACGTCCGGATTTTGTTATCAATTCGACTTTTGAATTGTTTATTGAACTCA ATGCGACGGATGAACAGTGTGATTTCCAATCAATATATGCGAGTGGTATAAAAGGGAAGGCAGGATTGTCTCCTGATGATTTGGCTGAAGATCTTGGCCC ACTTTTTGAGGCTATAATGAGATGCATACCTGGACCATGTATTGACAAAGACGGTGCACTGCAAATGCTTGCCACAAATATCGAGTATGATGAACATAAA GGACGAATAGCTATTGGACGGTTGCATGCTGGGGTTCTGCAGAAAGGAATGGATGTGAGGGTATGCACATCAGAAGATTCGTGTAGATTTGGAAAAGTTA GTGAGCTTTTTGTTTATGAGAAGTTCATTAGGGTTCCAGCCACAAAAGTGGAAGCTGGTGACATTTGTGCTGTCTGTGGAATTGAGGACATTCAAATTGG GGAGACAATCGCTGATAAAGCATTCGGGAAGCCATTACCATCTATCAGAGTGGAAGAACCAACTGTGAAAATGGCCTTTTCCATAAATACATCACCTTTT GTTGGCCGAGAGGGAAAATATGTTACCAGCAGGAATTTACGAGATCGACTCTACCGTGAGCTTGAACGAAATTTAGCTATGAAAGTTGAAGATGGTGAAA CTGCTGATACATTTGTTGTCAGTGGGCGTGGTACTTTACATATCACCATATTAATAGAGAACATGCGACGAGAAGGATACGAATTCATGGTGGGACCTCC AAAGGTCATCAACAAAAAGGTCGATGACAAAGTGCTAGAACCATATGAGATTGCCACTGTGGAGGTTCCAGAAGAGCACATGGGGGCTGTGGTTGAACTT CTTGGTAGAAGGCGTGGACAGATGTTTGATATGCAAGGGGTTGGGTCGGAGGGAACAACCCTGCTTAAATATAAGATTCCCACCCGTGGCCTTCTTGGAT TGCGTAATGCAATTTTGACAGCTTCTCGTGGCACTGCCATTCTCAACACAATATTTGATAGCTATGGACCTTGGGCTGGTGATATAATTACACGAGATCA GGGTTCATTGGTTGCCTTTGAGGATGGAGCATCTACTTCTTATGCCCTTGCCAGTTCACAAGATAGAGGGCAAATGTTCATTAGACCTGGAGCAGGAGTT TATAAAGGTCAAATAGTTGGCATCCATCAACGAACAGGGGACCTGTCGCTTAATGTGTGCAAGAAAAAGGCTGCTACTAACGTACGTTCAAATAAAGAAC AAACAGTGGTTCTTGATACCCCTTTGGATTATAGTCTGGATGACTGTATTGAGTATATCCAAGAAGATGAACTAGTGGAGGTTACTCCCTCAAGCATTCG AATGTGCAAAAATCCAAAGCTTGCAAAAAAGACAAGGTGA
AA sequence Show only first row Show all	>Potri.006G053000.1 pacid=42770644 polypeptide=Potri.006G053000.1.p locus=Potri.006G053000 ID=Potri.006G053000.1.v4.1 annot-version=v4.1 MEMAINIHSSSSSSFSLINPKPPLLTKQLFGSSFTLSSFPNTSKTTSTSSLRCRRSRFSFHSPIKCSVSTEASTTEKRSQMMRRGDIRNIAIVAHVDHGK TTLVDAMLKQSKVFRDNQFVQERIMDSNDIERERGITILSKNTSITYKDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE FGHAVVVVVNKIDRPSARPDFVINSTFELFIELNATDEQCDFQSIYASGIKGKAGLSPDDLAEDLGPLFEAIMRCIPGPCIDKDGALQMLATNIEYDEHK GRIAIGRLHAGVLQKGMDVRVCTSEDSCRFGKVSELFVYEKFIRVPATKVEAGDICAVCGIEDIQIGETIADKAFGKPLPSIRVEEPTVKMAFSINTSPF VGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVDDKVLEPYEIATVEVPEEHMGAVVEL LGRRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDIITRDQGSLVAFEDGASTSYALASSQDRGQMFIRPGAGV YKGQIVGIHQRTGDLSLNVCKKKAATNVRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPSSIRMCKNPKLAKKTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Potri.006G053000 [exp]	0	1
AT1G73885			unknown protein		Potri.015G054100 [exp]	2.44	0.9823
AT1G73885			unknown protein		Potri.015G053800 [exp]	2.44	0.9828
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	3.16	0.9730
AT4G31980			unknown protein		Potri.001G046000 [exp]	3.87	0.9654
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	4.00	0.9704
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	5.74	0.9779
AT1G22850			SNARE associated Golgi protein...		Potri.013G099600 [exp]	6.63	0.9675
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	7.00	0.9718	Pt-AGT.2
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	8.24	0.9732
AT2G44930			Plant protein of unknown funct...		Potri.012G011800 [exp]	8.94	0.9637

Compare expression of checked genes

Potri.006G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.