Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33680 388 / 5e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 390 / 1e-123 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 388 / 9e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 386 / 3e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 387 / 1e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 379 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 379 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 377 / 3e-118 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 372 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 372 / 3e-116 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 437 / 4e-141 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 423 / 2e-135 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 423 / 2e-134 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 415 / 6e-132 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 404 / 2e-128 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G258500 [exp] 401 / 1e-127 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 399 / 5e-127 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 394 / 2e-125 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 394 / 2e-125 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014594 [exp] 431 / 5e-140 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 424 / 5e-137 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030249 [exp] 404 / 4e-130 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 403 / 6e-130 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004253 [exp] 406 / 3e-129 AT3G49170 832 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 401 / 1e-126 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 399 / 9e-126 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 387 / 4e-122 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012873 [exp] 386 / 5e-122 AT2G40720 946 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 390 / 1e-121 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G053100.1 pacid=42768324 polypeptide=Potri.006G053100.1.p locus=Potri.006G053100 ID=Potri.006G053100.1.v4.1 annot-version=v4.1 ATGAATGCCCTTCTCCCCGCCATTTCCCTTCCCTGTTTCTCAAAACCCCAACAACCTTTCCCGCCATTGAAACCAAAACCACCCAGCACCACCTTCCCCT CCTCCTTTAAACCCCTAAAACACAGCAACAGCAACAAAACACAAACCCCAAACCCCAAAACAACTCAGAACTGCACTAATATCTCCTTTGCATCTCCTTC TGAAGAGACCCTTCTATCTAGTGACTGGCCTCAGCTCCTAAAAATCTCAATTGGGTCTAAAGATTTCTTGCTAGGCAAGGCAATCCATGCCTACTTAGTA AAAATAGCCTCCCAAAATGACCCATTTGAAGGCAATAATCTTATTAATCTGTATTCGAAATTTAACAGATTGGATCTGGCATGGAAGGTGTTTGATGAAA TGCTTGTTAGAAACACTATTACTTGGACTTCACTAATAAAAGGGTGTCTAGAGAATGAAGATTTTGTGTCTGGGTTTAGTGTTGTTTGTGATATGTGTGA ATTTGGAGAGAAGTTTAATGAGCATACTTGCGTGGTGATTTTACAGGCTTGTAGCGATATAGGGGATGTGGTATTAGGGGAACAAATTCATGGTTTTGTA ATAAAAAGTGGGTTTGAGGAGAATGTTTTTGTTGGCACTTCATTGATTTCTATGTACTCGAGAAGCGGGAACTTTGATGAGGCAGAGAAAGTGTTTAATG GTGTGGGTTGTAAAGATCTTCGGTGTTTAAATTGTATGATTTTGGAATATGGGAAGGCTGGATACGAGAAGAGGGCTATTGGGGTTTTTATATATCTGAT AAGTGTTGGTTTGGATCCTAATGATTATACTTTCACTAACATAATTAGTACTTGCAATGTAGAGGAGGGTAAGCAACTACATGGGCTTGCTGTAAAGTAT GGTGTTTTGCTTCAAACTTCGGTGGGAAATGCAGTTATCACTATGTATGGGAAAAATGGAATGGTTGAGGAGGCAGCGAGAATGTTTTCTGTGATGAATA AGAAGAATTTGATTTCTTGGACTGCCTTAATATCAGGCTACACAAGGAATGGTTATGGTGAAAAGGCTGTTGATGGTTTTCTGGAATTGCGTGGTTGTGG TGTTGAATGTGATTCTGGTTTGTTAGCTACAATTCTTGATGGCTGCTCAGAATGCAAAAACTTGGATTTGGGAACTCAAATTCATGGATTAGTGATCAAG CTTGGTTATCCCTGTGATATTAATATTGGGACTGCTTTAATAGATTTATATGCCAAATGCAAGAACTTTCAGTCTGCAAGAACAGTTTTTAATGGTCTTT CCCCTAGGAGTACTGCTTCTTTCAACGCCATTCTAGTGGGATTTATTGAGAATGATAGCAACGAAGAAGATCCCATGGTTTTTCTTAGCCAGCTGAGACT GGCTGGTATTAAACCAGATTCAGTGAGTTTTTCACGGCTTCTCAGTTTATCTGCCAATCGAGCTTCTTTAGTAAAAGGGAGAGGTCTCCATGCATATTCT ATTAAAACAGGATTTGCAGGCCATATTTCAGTATCCAATGCTTTAATTACCATGTATGCCAAATGTGGAATCGTTGAGGATGCTTATCAAGCATTTAATT CAATGAGCGCTAATGATTGCATATCTTGGAATGCCATAATCTCGGCTTACTCTCTTCATGGTCAAGGTGAAAAGGCCTTATTGCTATATCAAGAGATGGA GGAGAAAGGGTTTACTCCTGATGAGATCACGATATTGGTCATCCTTCAAGCTTGCACTTATTCGGGTTTGTCGGAAGATGGATTACACCTATTCAACACA ATGGAATCAAAATATGGGATTCAGCCATTGCTTGAGCACTATGCTTGTATGGTTGATCTTTTGGGCCGGGCTGGCTATTTATCACAAGCCATGGATATTA TTAACAGAAGTCCCTTTTCAGAGTCAACTTTGCTTTGGAGAACTTTGGTCAATGTGTGTAAGTTGTGCGGGGATCTGAATCTTGGCAAGTTAGCTTCAAA ACATTTACTTGATTTGTCACCTGATGAGGCAGGTTCTTATGTACTTGTTTCAAATATTTATGCTGGTGAAGGAATGATAGATGAGGCATCGAAGGTTAGA ACAACTATGAAAGACTTGAAGTTGAGTAAAGAAGCAGGCAGTAGCTGGGTTGAGATTGATAACATGGTCCATTATTTCGTGGCAAGTGGCACAGACCATC CAGAAAGTATAGAAATTTATGCAAGATTGGATCTATTAAGGAATGAAATGAGAGGGATATATGATAGCAAAGCTGATCTCAATCTAATTTAA
AA sequence Show only first row Show all	>Potri.006G053100.1 pacid=42768324 polypeptide=Potri.006G053100.1.p locus=Potri.006G053100 ID=Potri.006G053100.1.v4.1 annot-version=v4.1 MNALLPAISLPCFSKPQQPFPPLKPKPPSTTFPSSFKPLKHSNSNKTQTPNPKTTQNCTNISFASPSEETLLSSDWPQLLKISIGSKDFLLGKAIHAYLV KIASQNDPFEGNNLINLYSKFNRLDLAWKVFDEMLVRNTITWTSLIKGCLENEDFVSGFSVVCDMCEFGEKFNEHTCVVILQACSDIGDVVLGEQIHGFV IKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCNVEEGKQLHGLAVKY GVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIK LGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYS IKTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNT MESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVR TTMKDLKLSKEAGSSWVEIDNMVHYFVASGTDHPESIEIYARLDLLRNEMRGIYDSKADLNLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.006G053100 [exp]	0	1
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	1.00	0.9560
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	4.00	0.9481
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	6.00	0.9420
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	6.00	0.9407
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083800 [exp]	6.70	0.9280
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	7.48	0.9300
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.003G193600 [exp]	8.83	0.9069
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	9.48	0.9411
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	10.81	0.9227
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	12.00	0.9178

Compare expression of checked genes

Potri.006G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.