Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGK2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57550 519 / 0 GK-2, AGK2 GUANYLATE KINAS 2, guanylate kinase (.1.2) AT2G41880 483 / 4e-171 AGK1, GK-1 guanylate kinase 1 (.1) AT3G06200 86 / 6e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054200 [exp] 675 / 0 AT3G57550 493 / 1e-174 GUANYLATE KINAS 2, guanylate kinase (.1.2) Potri.008G200600 [exp] 87 / 5e-19 AT3G06200 337 / 8e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G029400 [exp] 83 / 2e-17 AT3G06200 331 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011328 [exp] 540 / 0 AT3G57550 518 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2) Lus10041236 [exp] 90 / 5e-20 AT3G06200 341 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021947 [exp] 89 / 8e-20 AT3G06200 342 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00625 [poplar] [flax] Guanylate_kin Guanylate kinase
Representative CDS sequence Show only first row Show all	>Potri.006G053400.3 pacid=42770017 polypeptide=Potri.006G053400.3.p locus=Potri.006G053400 ID=Potri.006G053400.3.v4.1 annot-version=v4.1 ATGGGAGAAGCCCCAGCTTTCGTTGTTGATAATCTTCTGCAGAATCAGGATGGATTTGGCTCAAAATCCAAAGGCTGCAACACCACCACAACCATCGGGG ATAAAACTTATGTGATTGGTGGTGGCAATGATGAGTCCACATTGTCTGTTGAAGTTCAAATTTTTGACAAAACTACTGGCAATTGTGTAACTCCTATCGT GCTGGGAACAAAACCTAACACATGCAAAGGCCTCTCAGCTGTATCGTTGAATGATGATCGTATCTTGATAGTTAAGAAGGGTTCCACCCCGGATGACTGC ATTTGGTTCCTTGAGGTGGATACTCGGTTTGTTAGGGAGCAGAAAAAAATTCAGGGGACTGATGTTGTTGCCTGGAGTAAGGGAGCAAGGGGTTATGCTG AGAAGCCAGTTGTCATAAGTGGTCCTTCTGGAGTGGGCAAGGGAACATTAATATCCATGTTCATGAAGGAATTCCCATCTATGTTTGGTTTTTCTGTAAG CCACACAACCCGTGCACCAAGATGCATGGAGAAGGATGGGGTTCATTACCATTTCACTGAGCGAAGTATTATGGAGAAAGAGATAAAAGATGGGAAATTC CTTGAGTATGCTTCTGTTCATGGAAATCTGTATGGGACCAGTATCGAAGCTGTTGAGGTGGTAACAGATGCGGGGAAGAGATGCATTCTTGACATAGATG TTCAAGGGGCAAGATCTGTGAAGGCTAGTTCCCTGGAAGCAATTTTCATCTTTATCTGTCCCCCCTCAATGGAGGAGCTTGAGAAACGCCTGCGTTCAAG AGGCACTGAGACAGAGGAGCAGATTCTTAAGCGACTCCGAAATGCAAAAACAGAGATGGAGCAAGGACATTCTTCGGGCATCTTTGATCATATCCTGTAT AATGATAATCTGGATGAGTGTTATGAGAGCCTTAAGAAACTCCTTGGGCTAGATGGAGCTGCTGCAGCTACCCAGAGATCAGCACCCCAAGGGATTGATC TGCCTACAGACCATTCCGTTTCGAAAATGGATAACAAGGTTATCATAAACTGTGGAACACCGGAACTAAAGAAAGCATCAAAGAACTTCAGGATAGTTTT GGATGTATCCTCACTCAAGGGAGGAGCTCCTGGACGGACAAGAGGGCTTGACGTGTACGCCATTGACTCGTTTTCAGATGGCTTGAATGGGATCAATCAA ACAAGCTAA
AA sequence Show only first row Show all	>Potri.006G053400.3 pacid=42770017 polypeptide=Potri.006G053400.3.p locus=Potri.006G053400 ID=Potri.006G053400.3.v4.1 annot-version=v4.1 MGEAPAFVVDNLLQNQDGFGSKSKGCNTTTTIGDKTYVIGGGNDESTLSVEVQIFDKTTGNCVTPIVLGTKPNTCKGLSAVSLNDDRILIVKKGSTPDDC IWFLEVDTRFVREQKKIQGTDVVAWSKGARGYAEKPVVISGPSGVGKGTLISMFMKEFPSMFGFSVSHTTRAPRCMEKDGVHYHFTERSIMEKEIKDGKF LEYASVHGNLYGTSIEAVEVVTDAGKRCILDIDVQGARSVKASSLEAIFIFICPPSMEELEKRLRSRGTETEEQILKRLRNAKTEMEQGHSSGIFDHILY NDNLDECYESLKKLLGLDGAAAATQRSAPQGIDLPTDHSVSKMDNKVIINCGTPELKKASKNFRIVLDVSSLKGGAPGRTRGLDVYAIDSFSDGLNGINQ TS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.006G053400 [exp]	0	1	AGK2.1
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Potri.006G052900 [exp]	1.73	0.6738	CPK14.1
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.009G050000 [exp]	4.58	0.6366
AT1G16040			unknown protein		Potri.003G184701 [exp]	5.38	0.6764
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040500 [exp]	16.00	0.6601
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	16.79	0.6754
AT1G03220			Eukaryotic aspartyl protease f...		Potri.005G095600 [exp]	18.33	0.6399
AT4G29560			unknown protein		Potri.006G151500 [exp]	22.97	0.5959
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Potri.010G046900 [exp]	31.40	0.5824
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.012G094600 [exp]	33.40	0.6059
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.006G115700 [exp]	34.05	0.6234

Compare expression of checked genes

Potri.006G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.