Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30500 122 / 7e-34 CCAAT NF-YA7 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) AT3G14020 124 / 2e-33 CCAAT NF-YA6 "nuclear factor Y, subunit A6", nuclear factor Y, subunit A6 (.1) AT3G20910 122 / 2e-32 CCAAT NF-YA9 "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1) AT1G54160 119 / 3e-31 CCAAT NFYA5, NF-YA5 NUCLEAR FACTOR Y A5, "nuclear factor Y, subunit A5", nuclear factor Y, subunit A5 (.1) AT2G34720 112 / 8e-30 CCAAT NF-YA4 "nuclear factor Y, subunit A4", nuclear factor Y, subunit A4 (.1) AT5G12840 113 / 1e-29 CCAAT NF-YA1, ATHAP2A, HAP2A, EMB2220 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) AT5G06510 112 / 3e-29 CCAAT NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) AT1G17590 113 / 6e-29 CCAAT NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4) AT1G72830 113 / 7e-29 CCAAT NF-YA3, ATHAP2C, HAP2C "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) AT3G05690 99 / 4e-24 CCAAT NF-YA2, ATHAP2B, HAP2B, UNE8 UNFERTILIZED EMBRYO SAC 8, "nuclear factor Y, subunit A2", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, nuclear factor Y, subunit A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060600 [exp] 174 / 2e-52 AT5G12840 114 / 9e-30 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G266000 [exp] 169 / 2e-50 AT5G12840 103 / 1e-25 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.011G098400 [exp] 129 / 4e-36 AT1G30500 171 / 4e-54 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.001G257600 [exp] 130 / 4e-35 AT5G12840 216 / 1e-68 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G372100 [exp] 126 / 4e-35 AT1G30500 170 / 1e-53 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.009G052900 [exp] 125 / 3e-33 AT5G12840 203 / 1e-63 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.016G068200 [exp] 117 / 8e-31 AT5G06510 194 / 2e-60 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G201900 [exp] 117 / 2e-30 AT5G06510 166 / 3e-49 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G145100 [exp] 113 / 6e-29 AT1G72830 168 / 3e-49 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012202 [exp] 137 / 1e-38 AT1G30500 121 / 7e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10011326 [exp] 135 / 8e-38 AT1G30500 118 / 2e-32 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10023358 [exp] 130 / 5e-37 AT1G30500 192 / 5e-63 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10016411 [exp] 134 / 8e-37 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10038448 [exp] 131 / 1e-36 AT1G30500 205 / 1e-66 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10019708 [exp] 134 / 8e-35 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10021259 [exp] 118 / 1e-30 AT5G06510 178 / 5e-54 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10013592 [exp] 117 / 2e-30 AT5G06510 175 / 1e-52 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10030137 [exp] 116 / 3e-30 AT5G12840 170 / 5e-51 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10009944 [exp] 107 / 9e-27 AT5G12840 229 / 1e-73 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02045 [poplar] [flax] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Potri.006G053500.2 pacid=42769901 polypeptide=Potri.006G053500.2.p locus=Potri.006G053500 ID=Potri.006G053500.2.v4.1 annot-version=v4.1 ATGCAGAAAACATTGGACAGGACTGTGACGACCAATTATCCACTCTCATCCCCTTCCAAACCTTGGTGGTGTAGTGCAGGGCATCATGCTATCTTCTCAA ATGTCTTGGGGGAAAGTACGAAAAACTTGTCTCTTCAAGAATCCACAGATGATGGTTTAGGGACCAAGGCCAGCAAACCACATGGCAATGTCCAAATGGA TGGAGGAACCGTTGCTTATAAAGAAAAGCAACTCAATGCAGTGTCAGCATCAGATGGAAAATACGGAGACCATCACCATCCACAGCAAGCTGCATCCATA ATGATTCCAGCTATGGGTGTATACCTTGGTCCATCTACCCAGCTGGAACTTGCTGGCCACTCAATTGTTCATTCTCAATATGCTGGGCCAAATCCTTCTA GAATGGTGTTACCCCATGAAATGGCAGAAGAACCTGTTTATGTGAATGCTAAGCAGTACCATGGCATTCTGAGGCGAAGACAGTCACGCGCTAAGGCTGA GCTAGAAAGGAAACTTATAAAAACAAGAAAGCCTTATCTTCACGAGTCCCGGCATCTACATGCTATGAGAAGGGCAAGAGGTTGTGGAGGCCGTTTTCTT AACACAAAGAAACCTGACACTACCAATAATACTGCACCTGATAAGCATACCAGCTCTGATGAAACTGTTTCAAGAAACTTTACCAGCTCATCAAGCTCTG GACCTGTGCTGTCTCACTTTTCCAGAAACTCTGATTCGTCAATGAGTAATGATGCGGAAGTAATAGAGTCTCTGTGTCAAATGCACCCTCATCAGACATA TCTGAGCAAAGGATGCACCCCGCAGTTTCCCAGGTATCACCTTTCCAAATTTCCTTCACTTTCAGAAAAGATGGTGGGAGAAAGGGATAACAAATTATGG TGA
AA sequence Show only first row Show all	>Potri.006G053500.2 pacid=42769901 polypeptide=Potri.006G053500.2.p locus=Potri.006G053500 ID=Potri.006G053500.2.v4.1 annot-version=v4.1 MQKTLDRTVTTNYPLSSPSKPWWCSAGHHAIFSNVLGESTKNLSLQESTDDGLGTKASKPHGNVQMDGGTVAYKEKQLNAVSASDGKYGDHHHPQQAASI MIPAMGVYLGPSTQLELAGHSIVHSQYAGPNPSRMVLPHEMAEEPVYVNAKQYHGILRRRQSRAKAELERKLIKTRKPYLHESRHLHAMRRARGCGGRFL NTKKPDTTNNTAPDKHTSSDETVSRNFTSSSSSGPVLSHFSRNSDSSMSNDAEVIESLCQMHPHQTYLSKGCTPQFPRYHLSKFPSLSEKMVGERDNKLW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.006G053500 [exp]	0	1
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.008G166500 [exp]	22.44	0.6452
AT4G29190	C3HZnF	AtOZF2	Arabidopsis thaliana oxidation...		Potri.006G234300 [exp]	23.57	0.6905
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	24.18	0.6413
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.001G266000 [exp]	25.27	0.6564
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.003G113300 [exp]	30.91	0.6545
AT1G22540			Major facilitator superfamily ...		Potri.019G079700 [exp]	37.96	0.6356
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	40.62	0.6169
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.002G142200 [exp]	43.63	0.5512
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	47.62	0.6133
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.010G142300 [exp]	50.55	0.5803

Compare expression of checked genes

Potri.006G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.