Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41890 764 / 0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT1G34300 341 / 3e-105 lectin protein kinase family protein (.1) AT2G19130 267 / 1e-77 S-locus lectin protein kinase family protein (.1) AT4G00340 241 / 3e-68 RLK4 receptor-like protein kinase 4 (.1) AT5G60900 213 / 7e-59 RLK1 receptor-like protein kinase 1 (.1) AT4G32300 213 / 1e-58 SD2-5 S-domain-2 5 (.1) AT5G24080 203 / 2e-57 Protein kinase superfamily protein (.1) AT4G11900 205 / 2e-55 S-locus lectin protein kinase family protein (.1) AT1G65800 201 / 2e-54 ARK2 receptor kinase 2 (.1) AT5G35370 197 / 7e-53 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G053800 [exp] 1294 / 0 AT2G41890 768 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.001G006100 [exp] 506 / 9e-169 AT2G41890 389 / 1e-123 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.013G115800 [exp] 374 / 1e-117 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 361 / 2e-112 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 358 / 1e-111 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 352 / 3e-109 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 350 / 3e-108 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 303 / 2e-90 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.005G057000 [exp] 299 / 6e-90 AT5G60900 456 / 5e-150 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 359 / 8e-112 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 287 / 1e-84 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10024195 [exp] 267 / 7e-78 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10029802 [exp] 260 / 3e-75 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031230 [exp] 259 / 1e-74 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10042266 [exp] 258 / 1e-74 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031231 [exp] 256 / 6e-74 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10024343 [exp] 258 / 2e-73 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 253 / 3e-72 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 251 / 3e-72 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0168 [poplar] [flax] PAN PF00024 [poplar] [flax] PAN_1 PAN domain CL0168 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0168 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G053700.1 pacid=42768613 polypeptide=Potri.006G053700.1.p locus=Potri.006G053700 ID=Potri.006G053700.1.v4.1 annot-version=v4.1 ATGCTTGAGCAGGGCAATTTTTTGTTCAATTCGCCTTTCCTTCCGTGTGTCTTTTTTTGGTTCTTCCTCTTTCCTGTTGTTGCTTCACAAATTCCCTTGG GGTCAAAGCTTTCTGTAGAGGAAAACAACTTGTGGGTTTCCCCCCGTGGTGATTTTGCTATTGGATTCGTTAACCGTTCTGATCAGCCCTATCAGTATAG TGTTGGGATACGTTTCAATTCGAAATCTATTCCTGTTCCCGAACAAACTGTGGTTTGGGTTGCTGGAGCTGATGTCACTGTTGGTAACAAGTCCTATTTC CAGCTTTCTCAAAATGGGGAACTGGTATTGGTTGATTCTTTGAAGGGAGTCACTGTATGGACCAGCAACACAAGCGAATTAGCTGTTGTTTCGGCTCTTC TTCGTGATGATGGCAACCTTTTTCTATTGAATAGAAAGCAAGAGGTTGTTTGGCAAAGCTTTGATAATCCATCCGACACGCTTCTTCCAGGCCAGAATTT ACCTGTTCATAAAACACTAAGAGCAGCAAGCAGAAATTCTGTTTCAAGTTATTACAGTCTTTACATGAATGCTTCAGGTCAGTTACAGCTAAAGTGGGAA AGTGATGTCATTTACTGGTCTAGTTACTGGTCCAGAGGAAATCCATCAAGTTCGAATCTTGGTGCTGTCCTTACCTCTGGTGGAGTCCTGCGACTTGTGG ACCACAATCAGGAACCCGTTTGGTCTGTTTTTGGGGAAGACCACAATGACAGTGTAAATTATCGGTTACTTAAATTAGACATTGATGGTAATCTGCGGAT GTACTCATGGGTAGAAGCTACAGCGTCATGGAGATCAGTTTGGCAAGCTGTTGAAAATCAGTGCAATGTTTTTGCAACCTGTGGCGAGCATGGCATCTGT GTTTTCAATGCATCGGGATCTCCCGAATGCCAATGCCCTTTCAAGACAACATCTTCTCCCAGCTCGAAATGTTTTGCACTGAATTGTGAATCTAATTACA GTATGGATACTTATGAGCATACTTTTCTGTATGGGATTTATCCACCAAATGAATCAATCACCATTACTAGTTTACAGCAATGTAAAGAGTTGTGCATACA GGACCCGGCCTGTACAGCTGCAACCTTCACAAATGACGGAACTGCTCAGTGCCGAATGAAGACAAGTCCATACTTCTCTGGGCATCAAAACCCCTCTTTA AGTTCGATATCTTTTGTTAAGAAATGCTCAGACCCCATAGCAGTTAATCCCCATGCCTTTAGATCTTCTCCAGCACAATCTCCTGTCAAACGGTCTCATG GGTTGTGCATTTCTTGTCTAATTGGAGCAGCCTCTGGCACATTTGTTTTGTTTGCTATTGTTCAGATAGGAATCGGCTACTTCATCTATAGAAGAAGATA TCAGATTTTGAGGAAAGCTGCTTCAGCTTACCCGGGCTGGAACTCGAAGGGTTTGATGATGTTACCATTTACAGAAATCAAGGACATCACAGGGAATTTC AAGCACCAGATAGGGCCAGGTATGTATAGAGGTGAGCTTCCAAACCATCAGCCAGTAGCAGTCAAAGACCTTGAAAACGCTATTGAAGAAAGGAAGTTTC GAGCTGTTGTTTCAAAGATAGGAAGTATACATCACAAAAACCTGGTGAGGCTTGATGGCTATTGTTTTGAGTTAGGTCATAGATATCTGGTCTATGAATA CGTCAAAAACGGTTCTGTGGATAAATATATAGAAGACGATGAGTTGAGTCAGAGACTGACTTGGAAAAGGAGAGTTGACATATGCATAACTGTGGCAAGG GCCATTTGTTATCTGCATACAGGATGCAGGGAGTTTATAAGCCACGGGAATTTGAAATGTTCAAATGTAGTCCTGGATAAAAATTACGAGCCCAAGGTCA GTGAATTCGGGTTGGGAACAGCTCATCTCGAGGCATCATATGGTGGGGAGAAAGATGTGGAGGATTTTGGCAAGATGGTGCTGATATTGATAACCGGGCG TCCAGAAGTCCAGGATGCCTGGGAATGGATCTATGAGGAATGGATCCAGCGGCGTCTAGAGGGGGTGGTTGATAAAAGACTTGACGCCGGGGTGGATTTA AAGGAGCTAGAGCGACTGTTACGAATTGCATTTTGGTGTCTTCAAACAAATGAACATATGAGACCTTCGATGGGTGAGGTGGTGAAGGTATTGGAAGGCA CATTAACCGTTGATCCCCCGCCGCCTCCTTTCAGCCATAGGTTATCAGAAGAAGAGTCCTTGGAGTCAGGCTCCAAACCTCCAAGTCCAGTGGAACCATG A
AA sequence Show only first row Show all	>Potri.006G053700.1 pacid=42768613 polypeptide=Potri.006G053700.1.p locus=Potri.006G053700 ID=Potri.006G053700.1.v4.1 annot-version=v4.1 MLEQGNFLFNSPFLPCVFFWFFLFPVVASQIPLGSKLSVEENNLWVSPRGDFAIGFVNRSDQPYQYSVGIRFNSKSIPVPEQTVVWVAGADVTVGNKSYF QLSQNGELVLVDSLKGVTVWTSNTSELAVVSALLRDDGNLFLLNRKQEVVWQSFDNPSDTLLPGQNLPVHKTLRAASRNSVSSYYSLYMNASGQLQLKWE SDVIYWSSYWSRGNPSSSNLGAVLTSGGVLRLVDHNQEPVWSVFGEDHNDSVNYRLLKLDIDGNLRMYSWVEATASWRSVWQAVENQCNVFATCGEHGIC VFNASGSPECQCPFKTTSSPSSKCFALNCESNYSMDTYEHTFLYGIYPPNESITITSLQQCKELCIQDPACTAATFTNDGTAQCRMKTSPYFSGHQNPSL SSISFVKKCSDPIAVNPHAFRSSPAQSPVKRSHGLCISCLIGAASGTFVLFAIVQIGIGYFIYRRRYQILRKAASAYPGWNSKGLMMLPFTEIKDITGNF KHQIGPGMYRGELPNHQPVAVKDLENAIEERKFRAVVSKIGSIHHKNLVRLDGYCFELGHRYLVYEYVKNGSVDKYIEDDELSQRLTWKRRVDICITVAR AICYLHTGCREFISHGNLKCSNVVLDKNYEPKVSEFGLGTAHLEASYGGEKDVEDFGKMVLILITGRPEVQDAWEWIYEEWIQRRLEGVVDKRLDAGVDL KELERLLRIAFWCLQTNEHMRPSMGEVVKVLEGTLTVDPPPPPFSHRLSEEESLESGSKPPSPVEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41890			curculin-like (mannose-binding...		Potri.006G053700 [exp]	0	1
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.014G025300 [exp]	10.00	0.8784
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	13.49	0.8772
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	13.71	0.8752
AT1G12380			unknown protein		Potri.015G130800 [exp]	14.69	0.8545
AT1G69160			unknown protein		Potri.008G098200 [exp]	16.73	0.8644
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.004G138200 [exp]	19.79	0.8636
AT3G56810			unknown protein		Potri.006G026600 [exp]	20.71	0.8757
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Potri.014G111200 [exp]	25.03	0.8408
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	25.88	0.8749
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	26.32	0.8595

Compare expression of checked genes

Potri.006G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.