Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57570 966 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042364 [exp] 942 / 0 AT3G57570 842 / 0.0 ARM repeat superfamily protein (.1.2) Lus10026305 [exp] 254 / 7e-74 AT3G57570 229 / 2e-65 ARM repeat superfamily protein (.1.2) Lus10026304 [exp] 164 / 8e-46 AT3G57570 137 / 5e-37 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G054100.1 pacid=42767769 polypeptide=Potri.006G054100.1.p locus=Potri.006G054100 ID=Potri.006G054100.1.v4.1 annot-version=v4.1 ATGGAGAATCAACAAGAAGCGGAAGTGTTAATTCGGAAATTAGATTCCACAGAATCAATGATTTCAGTGACTATCGGCAGAGCTATTACCACTCTACTCA GTTCTCGAACTAAGAAGCTTCAAGACTCCATTCATCGCCTCTCTCTCGACTCTACCAACAAAAAGCCTTCTCTCGGTTCGCTGGAGGATTCACTTTGGTT CTTGCACAAATACGTTAAAGACGCGATTGAGAGACACGAGAAATTGGACCTGATTCTAGTTCCTATCACTCAACATTGTTTGAGGAATGTAAATTTGAAG CATGGAGGACAAGCTATGACAATAATCAACTGGTTATTTCAAGATGAGTTTGTTTTCGAAGCTGTTGCTATGGATTTGACTAATATTATCGAGAGGAAAG AGGATCGGTATGTTGCGCTTGGTTGGTGTATTCTTGTTCGTGGTTTAGTGGAGTATGAGAATTTTACGGAGCAACATACGCTAAATGGAATAAGAGATAA CTATAATGCGTTGTTGAAGATGCTTTGCTCATGTATCCCGCGTTTGGTTTGCATAGTGCGCAAGGGAAGCACTTTGCAGGATAGACTTGAGTTGCCTTCT CGCCTTTCAGTGTCTGCTGCAGATTGTATTTTGTCTATCACAGAAGCATTGACAAAAAAGACCAAGGTTGCGAGTAACAAGCCAAAATCATTGAATTCAA ATACATTACACGCTATTAGTTTGGTGTCAACTGCCATCAAAGAGAAGAAAGTGAAACCATCTGAATCATCAGAAGTGTTTAGTATTGAAATGGCTCACTT ACTTTGGAAGCAGATAGAAGTACTTATCACTCTGTTACAGAGACTTCTTGCTTGGAGCAGCAAAAGTAGGCCTTTACATGCTAAAGGGGTTGAGCAAGTG CTTAAATGGTTACAAGAGATAAAAAGGCACCATGGTCAAGTTGAAAATGAGACAGGTGGAAACATATTCAAAACAGAAGCCTTGCTAGTCTCTTCATGCT GGAAGCATTACAGCACTCTATTGCACTTGGAAGACTGTAGATTTTCTCAGCATTGCGATGATTTATTAAATCAATATATATCTGGCATCCAGTATTATAC GGATAACCATACCGAGGGGCATACAGAGAACAAGGATGGTGGTCTGGAGACTAGAAAGTTTTTCCTGAGATGTCTATGCCTTCTTTTGGGACGTTTAGAC AACAAGAAATTTGAAACCGCGTTGTCAGAAAATGGTTTGCAAATATCTCAAGTTCTTTTGTCACAGCTTCACTGTGCTGATGAAGATGTGGTGGAGGGTG CTGTTTACATACTTAAATCAGTCATATTGAAACCAAATCATTCATCTGGAAATGGTCTGACAGACAGTAGACAGATGGATGCTGTGCTACCTTTGTTACT GCACCTTCTGGATGAGCGCGATGGCACAGCCAGGGCTGTTGTGATGCTCATAGCAGAATGCTGCTCAATGAGCACTGACAGTAACTGCCTCAAACAAGTT CTAAGCCGCCTTGCTTCTGGAAATGCTTTGCAGAGGAGGAATGCCATTGATGTTATATCGGAACTTGTTTCCATATCATCAAATTCAGCAAACAAAAATT CTCATTTGGCGTGGCAAGATATTGCAAACAACTTGTTAGAATGCATTAATGATGAAGAAACAATAATTTGTGAACTGGCATCCAACTCACTCTCTATGAT CGACCCGTCATTAGTTTTGCCTACATTAGTTCAGCTTGTGTGCTCATCAGCAGGGAAGCAATCATCTGCTAGTGCTTCCTTTATTGCCATGCTCAAATAC CATAGTTCTAGACCTGAAGTTATATGTTTGCTACTTGACTGTCTTAGCAACCTTAACAAGAGTCCAGATCCTTCAAACACCGCAGGAGATATAAGGGAAG GATCAAAAGTGGACATTGATCGAGTACTCAAGTTGATCCCAGAGTGGTCTAAAACCGTTCAAGACTGGAATCCCTTAATCGGACCTTTAATTGACAAGAT GTTTTCTGAGCCAGCAAATGCCACCATTGTTCGATTTTTGAGTTATATAAGTGAACAATTGGCAGAAGTTGTAAATGAAATCTTCCATCCTGTTCTTTTG AAGATGAATGGACAGAAAGAGATTGATGAAGGCTTCATATCCATGTGGGAGAGCAGAAAGTATACAGACGAGGACTCTGTGAAAATGCAGCAATCTCTCT TTGAGCACCTGTGTCCACTGCTTATTATAAGGCTCCTTCCGCTGAGAGTTTTCAACGACCTCAGTTCATCTGTTTTGTATGGTCAACTTCCCAGTCAAAG CATTGCTCATGTTTCAGAATGTGGAGATGTCAACATTATTGACGAGTGTTTAGCTGCATTGCTTTTAAAGAGAGCATTTAATAAGTATGAATTTGAAGAT GTAAGAAAACTTGCTGCTGAGCTTTGCGGCCGTATTCATCCCCAGGTGCTCTTACCAATTGTTTCATCCGTATTAGAACATGCTGCAGCTTCTCATGATG TACTAAAGATAAAAGCATGCTTGTTTTCAGTTTGCACTTCTCTCGTGGTTAGAGGCGTGGATTCAATTTCTCATCCTGCTATTCTGAAAATAAGAAAAAT GATAGAAACTATTCTATTATGGCCTTCTTTAGATGGTGATGAAGTTTCCAAAGCACAACATGGTTGCATTGATTGTCTGGCACTTATGATTTGTGCTAAG CTGCAAGTTCCTTCATCATTCAAGGAATCCTCAAAGAACTTAGGCGCGGCTAGGAAGACCAGTTACTGTGGGAATGCTGCGTCAGGAAACTGTGTCCTCT TATATGTAATCAATCTACTTATAAATGATGAAAATGCACTTGTTTCTGCTTCCATGTCGGGTAGTGAGAACTCAGCATTTGAGGCACCAACCACTCATTC TTTCCGTGTCTGTATGGCCAATGTTCTTATCAGTGCTTGCCAGAAGATCTCGGACTCTGGCAAGAAACGTTTTGCTAAAAAAACAGTTCCACGTCTGCTT CAAGCTGTTGAGGGCGTAATGCATCCAGACATCAGAGCTGCTTGCATCCAGGTTCTGTTTTCAGCTGTTTACCATCTGAAGTCTGCAGTTCTTCCTTATT CATCTGATCTCCTAAACCTCTCCCTCAAATTTCTTAGTCGGGGGTCAGAGAAGGAGAGGATGGCAAGTGCTAAGCTAATCGCATCTCTTATGGCCAGTGA AGATGTGATTGTGAAAAGTATATCCGGGGGATTGCTAGAAGCAAGATCTGTGCTCTCACGCGTATCCTTTTCAGATTCTTCACCTGAATTACAACAAATA TGCCAACAATTGCTGGCATGCATAACTTCTCCCTAA
AA sequence Show only first row Show all	>Potri.006G054100.1 pacid=42767769 polypeptide=Potri.006G054100.1.p locus=Potri.006G054100 ID=Potri.006G054100.1.v4.1 annot-version=v4.1 MENQQEAEVLIRKLDSTESMISVTIGRAITTLLSSRTKKLQDSIHRLSLDSTNKKPSLGSLEDSLWFLHKYVKDAIERHEKLDLILVPITQHCLRNVNLK HGGQAMTIINWLFQDEFVFEAVAMDLTNIIERKEDRYVALGWCILVRGLVEYENFTEQHTLNGIRDNYNALLKMLCSCIPRLVCIVRKGSTLQDRLELPS RLSVSAADCILSITEALTKKTKVASNKPKSLNSNTLHAISLVSTAIKEKKVKPSESSEVFSIEMAHLLWKQIEVLITLLQRLLAWSSKSRPLHAKGVEQV LKWLQEIKRHHGQVENETGGNIFKTEALLVSSCWKHYSTLLHLEDCRFSQHCDDLLNQYISGIQYYTDNHTEGHTENKDGGLETRKFFLRCLCLLLGRLD NKKFETALSENGLQISQVLLSQLHCADEDVVEGAVYILKSVILKPNHSSGNGLTDSRQMDAVLPLLLHLLDERDGTARAVVMLIAECCSMSTDSNCLKQV LSRLASGNALQRRNAIDVISELVSISSNSANKNSHLAWQDIANNLLECINDEETIICELASNSLSMIDPSLVLPTLVQLVCSSAGKQSSASASFIAMLKY HSSRPEVICLLLDCLSNLNKSPDPSNTAGDIREGSKVDIDRVLKLIPEWSKTVQDWNPLIGPLIDKMFSEPANATIVRFLSYISEQLAEVVNEIFHPVLL KMNGQKEIDEGFISMWESRKYTDEDSVKMQQSLFEHLCPLLIIRLLPLRVFNDLSSSVLYGQLPSQSIAHVSECGDVNIIDECLAALLLKRAFNKYEFED VRKLAAELCGRIHPQVLLPIVSSVLEHAAASHDVLKIKACLFSVCTSLVVRGVDSISHPAILKIRKMIETILLWPSLDGDEVSKAQHGCIDCLALMICAK LQVPSSFKESSKNLGAARKTSYCGNAASGNCVLLYVINLLINDENALVSASMSGSENSAFEAPTTHSFRVCMANVLISACQKISDSGKKRFAKKTVPRLL QAVEGVMHPDIRAACIQVLFSAVYHLKSAVLPYSSDLLNLSLKFLSRGSEKERMASAKLIASLMASEDVIVKSISGGLLEARSVLSRVSFSDSSPELQQI CQQLLACITSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57570			ARM repeat superfamily protein...		Potri.006G054100 [exp]	0	1
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	1.41	0.8387
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	3.74	0.8367
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	6.48	0.8106
AT5G15400			U-box domain-containing protei...		Potri.004G121200 [exp]	8.12	0.7648
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	9.94	0.7851
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.019G077500 [exp]	10.09	0.7277
AT5G44090			Calcium-binding EF-hand family...		Potri.005G227100 [exp]	10.19	0.7583
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	14.49	0.7977
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	14.86	0.7799
AT3G12590			unknown protein		Potri.010G207900 [exp]	15.71	0.7673

Compare expression of checked genes

Potri.006G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.