Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03270 1058 / 0 DNA-binding protein, putative (.1) AT5G35970 326 / 8e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 186 / 2e-49 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 160 / 6e-41 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08840 150 / 2e-37 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT1G16800 147 / 2e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 141 / 1e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 141 / 2e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 129 / 4e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 126 / 3e-30 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073900 [exp] 320 / 2e-97 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G086400 [exp] 182 / 4e-48 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.001G148100 [exp] 181 / 1e-47 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.014G180200 [exp] 160 / 6e-41 AT1G08840 1528 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Potri.017G056700 [exp] 152 / 2e-38 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 146 / 3e-36 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 137 / 3e-33 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 134 / 3e-32 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 132 / 9e-32 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026309 [exp] 1108 / 0 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10042360 [exp] 655 / 0 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10024527 [exp] 340 / 7e-105 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024974 [exp] 313 / 6e-99 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 183 / 3e-48 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 182 / 4e-48 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10010991 [exp] 154 / 1e-38 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10037303 [exp] 146 / 4e-36 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 144 / 2e-35 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 142 / 5e-35 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.006G054600.1 pacid=42770595 polypeptide=Potri.006G054600.1.p locus=Potri.006G054600 ID=Potri.006G054600.1.v4.1 annot-version=v4.1 ATGGAGACAGAGAAAACGAAAAAGAAAGCAGCGGCTCTCTCGCTTCAAGAATTCATCTCCATTACGTCTCCTTTGCTCGATTTAGAGAAGGAATCAGAGA TATCAGCATCTATTGGTTCAGGCGCGTTAAGAAATTTAGATTCTGCTCAGAAGAAAGGTTCTACGATTCTCAATTTGAAGTGCGTTGATGCTCAGACAGG TTTGATGGGGAAGACGCTACTGGAGTTCCAATCTAATAAAGGAGATGTTTTACCTGCTCATAAGTTTGGCACACATGATGTGGTTGTCTTGAAACCGAAC AAAGCTGATTTAGGATCCCCTGCTCTTGGTCAAGGTGTTGTTTATCGGTTAAAGGACTCGTCTATTACTGTTGCTTTTGATGATATACCGGATGAGGGTT TAAATAGTCCGCTACGATTGGAGAAAGTTGCAAATGAGGTGACATATCGGAGGATGAAGGATGCCTTGATTCAGTTGAGCAAAGGTGTGCATAGAGGCCC CGCTGCTGACTTAATTCCTGTTTTATTTGGAGAGAGACAACCAACAATGTCAAAAAAGGATGTTACATTCACCCCAATTAACTCCCACCTTGATCACTCT CAGAAAGATGCCATTTCAAAGGCACTGTCATCAAAGAATGTATTTTTGCTACATGGACCTCCTGGAACTGGAAAAACCACAACTGTGGTGGAAATTATCT TGCAAGAAGTGAAAAGAGGATCGAAGATTCTTGCATGTGCTGCTTCAAACATTGCTGTCGACAACATTGTTGAGCGACTTGTTCCTCACAGAGTAAAGTT AGTGAGATTGGGGCATCCTGCACGCTTGCTACCTCAAGTATTGGACAGTGCACTTGATGCACAGGTTCTACGGGGGGACAACAGCGCTCTTGCAAATGAC ATTCGGAAGGAAATGAAGGCATTAAATGGAAAATTGTTGAAAACCAAAGATAAAAGCACAAGAAGAGACATACAGAAGGAACTCAGGACTCTTTCAAAAG AAGAACGTAAAAGGCAGCAGTTAGCCGTGATAGATGTAATTAAAAATGCAGATGTGGTGTTGACGACTTTGACTGGTGCATTTTCTCACAAGCTGAATAC TACTTCGTTTGATTTGGTGATTATTGATGAAGCTGCTCAGGCACTTGAGATAACTTGCTGGCTTGCTTTACTGAAGGGTTCAAGGTGTATACTTGCAGGA GACCATCTTCAGCTTCCTCCAACCATCCAAAGTGTTGAAGCTGAGAAGAAAGGGTTGGGAAGAACCCTCTTTGAACGCCTCACGGATCTGTATGGAGATG AAGTCACTTCTATGCTCACTGTCCAGTACCGCATGCATGAACTAATTATGAACTGGTCATCTAAAGAGCTTTACAACAGTAAGATCAAAGCCCATCCGAG TGTTGCTGCACATATGCTTTTTGATCTTGAGGGTGTCAAGAGATCCTCTTCTACAGAACCGACCCTTCTTCTTGTAGACATAGCTGGGTGTGATATGGAG GAAAAGAAGGATGAAGAAGATAGCACAATGAATGAGGGAGAAGCTGAAGTTGCAGTGGCCCATGCAAAGAGACTTGTTCAGAGTGGAGTCCAGGCTTCTG ACATTGGAATAATTACTCCTTATGCAGCACAGGTTGTCTTGCTCAGGATATTAAAAAACAATGATGATAAGCTAAAGGATATGGAAATCTCAACAGTGGA TGGTTTCCAGGGTCGAGAGAAGGAAGCCATCATTATTTCAATGGTTCGATCAAACTCAAAGAAAGAGGTGGGGTTTTTGAGTGACCATAGGCGGATGAAT GTGGCTGTGACACGGGCAAGAAGACAGTGTTGTCTTGTATGTGACACAGAGACAGTGAGTGGTGATGGGTTCTTAAAGCGATTAATTGAGCATTTTGAGG AGCACGGGGAGTATCTAAGTGCATCAGAGTACCTCAATGAATGA
AA sequence Show only first row Show all	>Potri.006G054600.1 pacid=42770595 polypeptide=Potri.006G054600.1.p locus=Potri.006G054600 ID=Potri.006G054600.1.v4.1 annot-version=v4.1 METEKTKKKAAALSLQEFISITSPLLDLEKESEISASIGSGALRNLDSAQKKGSTILNLKCVDAQTGLMGKTLLEFQSNKGDVLPAHKFGTHDVVVLKPN KADLGSPALGQGVVYRLKDSSITVAFDDIPDEGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPAADLIPVLFGERQPTMSKKDVTFTPINSHLDHS QKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSALAND IRKEMKALNGKLLKTKDKSTRRDIQKELRTLSKEERKRQQLAVIDVIKNADVVLTTLTGAFSHKLNTTSFDLVIIDEAAQALEITCWLALLKGSRCILAG DHLQLPPTIQSVEAEKKGLGRTLFERLTDLYGDEVTSMLTVQYRMHELIMNWSSKELYNSKIKAHPSVAAHMLFDLEGVKRSSSTEPTLLLVDIAGCDME EKKDEEDSTMNEGEAEVAVAHAKRLVQSGVQASDIGIITPYAAQVVLLRILKNNDDKLKDMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMN VAVTRARRQCCLVCDTETVSGDGFLKRLIEHFEEHGEYLSASEYLNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03270			DNA-binding protein, putative ...		Potri.006G054600 [exp]	0	1
AT5G42740			Sugar isomerase (SIS) family p...		Potri.008G118900 [exp]	1.41	0.6567
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.005G231100 [exp]	24.81	0.6497	Pt-MPK1.3
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Potri.015G064200 [exp]	28.16	0.6180	FIS1.3
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Potri.001G143700 [exp]	28.28	0.5889
AT2G05710		ACO3	aconitase 3 (.1)		Potri.014G153400 [exp]	30.59	0.6216
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	35.42	0.6426	Pt-UBP5.3
AT2G03070		MED8	mediator subunit 8 (.1)		Potri.010G253100 [exp]	37.04	0.6399
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.006G070800 [exp]	78.03	0.6086
AT5G37590			Tetratricopeptide repeat (TPR)...		Potri.004G085200 [exp]	87.87	0.5698
					Potri.008G177350 [exp]	178.19	0.5245

Compare expression of checked genes

Potri.006G054600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.