Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53720 981 / 0 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT5G41610 692 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 686 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 649 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 634 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT2G13620 615 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 369 / 1e-114 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 337 / 9e-103 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 301 / 2e-89 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G37060 283 / 1e-82 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134900 [exp] 704 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 697 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 696 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 679 / 0 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 677 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.007G105200 [exp] 604 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 405 / 2e-128 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 374 / 2e-116 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.019G123700 [exp] 368 / 2e-114 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025322 [exp] 759 / 0 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10032332 [exp] 692 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 671 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10030013 [exp] 606 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 603 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10024414 [exp] 527 / 4e-180 AT3G53720 514 / 1e-175 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10017541 [exp] 512 / 2e-167 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025324 [exp] 454 / 2e-151 AT3G53720 432 / 3e-143 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10004932 [exp] 391 / 8e-123 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040881 [exp] 389 / 9e-122 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.006G054700.2 pacid=42769209 polypeptide=Potri.006G054700.2.p locus=Potri.006G054700 ID=Potri.006G054700.2.v4.1 annot-version=v4.1 ATGCCAGTAATCAACATAACTTCCATCAGAACATCATCAAATGGAGCCTGGCAAGGTGATAATCCCCTGGACCATGCCTTCCCATTACTAATAGTTCAGA CTACCTTAATCGTAGTGGTTAGCCGTCTTCTTGCCTTCCTTCTCAAGCCCCTCCGCCAACCCAAAGTCATTGCTGAAATAGCTGGTGGGATTCTGCTTGG ACCATCAGCTATCGGACGAAACAAAGAGTACTTGAACTGGATTTTCCCGAAATGGAGCACACCGATACTCGAATCTGTAGCGAGTGTTGGTCTTCTTTTC TTTCTTTTCCTGGTAGGTCTAGAGCTTGATTTATCCTCAATTCGCAGGAGCGGTAAGCGTGCTTTTGGCATAGCAGTAGCAGGAATATCACTCCCATTTG TCTGTGGCGTAGCTGTAGCATTTGTCCTTAGAAAAGCAATTGAAGGAGAAGATCAAGTTGGTTATACTCAGTTCTTGGTGTTCATAGGGGTAGCACTTTC AATCACAGCATTTCCTGTTTTATCCCGCATTCTTGCAGAGCTCAAGCTACTAACAACTCAAGTAGGGGAGACTGCAATGGCTGCTGCAGCATTTAATGAT GTCACGGCTTGGATCTTGCTAGCCTTGGCAGTTGCTTTAGCTGGCAATGGGGCAGATGGCGAGCACAAAAGTCCCTTGATATCAATATGGGTTCTTATTT CAGGTGGTGCCTTTGTTGCAATCATGTTAACTGTGATCCGACCTGCTATGAAATGGATTGCCCGCAGATGCTCCTCGAAAAATAATATGATAGATGAAGC TTATATATGCTTCACATTGACCGGGGTTCTGGTGTCAGGATTCATTACTGACCTTATAGGAATTCATTCTATTTTTGGTGCCTTTGTTTTTGGACTCACT ATCCCTAAAGGAGGTGTGTTTGCAGAGAGATTGATAGAGAGGATTGAGGATTTTGTTTCGGCTTTGCTTCTCCCGCTTTACTTCGCTTCTAGTGGTTTGA AGACTGATGTGGCTACAATTCGTAATGGAAGGTCCTGGGGGCTTTTGGTGCTGGTTATAACTACAGCTTGTGCAGGGAAGATTATTGGCACCTTTGTAGT GGCGATGATGTTTATGATTCCAGCAAGAGAGTCTTTGACGCTTGGTGTGCTGATGAACACCAAAGGATTGGTGGAACTCATCGTCCTTGACATTGGCAAG GAGAAAAGGGTCCTTAATGATGAGAGCTTCGCAATCCTTGTTCTCATGGCACTCTTTACCACCTTCATCACCACCCCAACCGTCATGGCTATCTACAAAC CCGCCCGTGGTGGCTCCTCCACTAGCTCCCACCGCAAGCTAGGTGACCTGACCACCACAAAAGGCACAAAGGACGAGCTACGTATCCTTGCTTGTGCTCA TGGATCTGAAAATGTACCTCCACTTGTTAGTCTCATTGAGTCAATAAGGAGCACTAAAAAATCCCAACTCAAACTCTATATCATGCATCTGGTGGAGCTT ACTGAGCGATCATCATCAATCATCATGGTCCAAAGGGTCCGTAAAAATGGACTTCCATTTATTAATCAATCTCAGTCTAGTGAATGGAATGATCGAGTCA CAGGGGCATTCCAGGCTTATAGCCAACTGGGCCGAATTTCTGTGCGCACCATGACATCAATCTCAAATTTGACTACCACGCATGAGGATATTTGCCAAGT GGGAGAGAATAAGAAGGTAACTCTGATCATTTTGCCATTTCATAAACAATTGAGGGGAGAGGGTGATCAGATCATGGACAATGTTGGCCATGGATGGAGA GGGGTGAATCAAAGGGTGCTAAAAAATGCACCTTGTTCAGTGGCAGTGCTTGTGGATCGTGGATTTGGAAATGACTCTCAGATTTCAGAGGCTAACACCA ATATAACCCAAAGGGTCTGCATCATGTTTTTTGGTGGACCTGATGATCGTGAAGCCTTGGAGTTGAGTGGTAGGATGGCAGAACACCCAGTGGTTAAAGT TACCACTGTCAGATTCGTCCAAAAAGAAGGGCAAGAAAAAAACCATGTTGTGTTACAGCTTTCACCATCCGAACGTCGTAGTACTGAACTAAGTTACAGC TTCTCCACTGCTATAATGAACCCAGAGAAGGAAAAGGACCTGGACGAGACTGCCATAGCTGAATTTAAGAGCAAGTGGGAGGGGACAGTAGAGTACACAG AGAATGTTGTAAGCAACATTGTTGAGAGAGTGTTAGCAATAGGAAGGAGTGGGGATTATGACCTTATTTTTGTTGGCAAAGGCAGGTTTCCATCAACTAT GATTGCAGAATTAGCATACCGCCAAGCTGAACATGCAGAGTTGGGACCTATTGGAGACATATTGGCCTCATCAGGGCACGGTGTGGTCTCTTCAGTGCTG GTGATTCAACAACATGATTCAGCTCATGCAAAGGAGGCTCCAGTGTCGAAGGTGGTGCATTCCGAGCTCGAGAAGTCAGCCGAAGAGTCATGGAGTGTGG GAGAGATTACAAAGGATGCTGTGTGA
AA sequence Show only first row Show all	>Potri.006G054700.2 pacid=42769209 polypeptide=Potri.006G054700.2.p locus=Potri.006G054700 ID=Potri.006G054700.2.v4.1 annot-version=v4.1 MPVINITSIRTSSNGAWQGDNPLDHAFPLLIVQTTLIVVVSRLLAFLLKPLRQPKVIAEIAGGILLGPSAIGRNKEYLNWIFPKWSTPILESVASVGLLF FLFLVGLELDLSSIRRSGKRAFGIAVAGISLPFVCGVAVAFVLRKAIEGEDQVGYTQFLVFIGVALSITAFPVLSRILAELKLLTTQVGETAMAAAAFND VTAWILLALAVALAGNGADGEHKSPLISIWVLISGGAFVAIMLTVIRPAMKWIARRCSSKNNMIDEAYICFTLTGVLVSGFITDLIGIHSIFGAFVFGLT IPKGGVFAERLIERIEDFVSALLLPLYFASSGLKTDVATIRNGRSWGLLVLVITTACAGKIIGTFVVAMMFMIPARESLTLGVLMNTKGLVELIVLDIGK EKRVLNDESFAILVLMALFTTFITTPTVMAIYKPARGGSSTSSHRKLGDLTTTKGTKDELRILACAHGSENVPPLVSLIESIRSTKKSQLKLYIMHLVEL TERSSSIIMVQRVRKNGLPFINQSQSSEWNDRVTGAFQAYSQLGRISVRTMTSISNLTTTHEDICQVGENKKVTLIILPFHKQLRGEGDQIMDNVGHGWR GVNQRVLKNAPCSVAVLVDRGFGNDSQISEANTNITQRVCIMFFGGPDDREALELSGRMAEHPVVKVTTVRFVQKEGQEKNHVVLQLSPSERRSTELSYS FSTAIMNPEKEKDLDETAIAEFKSKWEGTVEYTENVVSNIVERVLAIGRSGDYDLIFVGKGRFPSTMIAELAYRQAEHAELGPIGDILASSGHGVVSSVL VIQQHDSAHAKEAPVSKVVHSELEKSAEESWSVGEITKDAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Potri.006G054700 [exp]	0	1
AT4G27745			Yippee family putative zinc-bi...		Potri.014G101600 [exp]	4.58	0.9288
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037300 [exp]	7.74	0.9102
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	13.52	0.8941
AT2G41480			Peroxidase superfamily protein...		Potri.006G069600 [exp]	22.71	0.8457
					Potri.017G122100 [exp]	23.32	0.8924
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.007G088900 [exp]	26.32	0.8747
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	26.49	0.8840	HSP70.7
AT5G53750			CBS domain-containing protein ...		Potri.011G122000 [exp]	26.72	0.7868
AT1G19715			Mannose-binding lectin superfa...		Potri.005G232400 [exp]	28.91	0.8357
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.008G080000 [exp]	30.74	0.8819

Compare expression of checked genes

Potri.006G054700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.