Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57630 1240 / 0 exostosin family protein (.1.2) AT5G22940 136 / 6e-34 F8H FRA8 homolog (.1) AT2G28110 114 / 1e-26 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT1G27440 110 / 1e-25 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G61840 108 / 5e-25 GUT1, IRX10-L Exostosin family protein (.1) AT4G38040 86 / 2e-17 Exostosin family protein (.1) AT1G21480 81 / 9e-16 Exostosin family protein (.1.2) AT5G25820 79 / 5e-15 Exostosin family protein (.1) AT5G16890 78 / 7e-15 Exostosin family protein (.1) AT5G11610 77 / 1e-14 Exostosin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068100 [exp] 115 / 3e-27 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 112 / 2e-26 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.012G109200 [exp] 112 / 4e-26 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 112 / 4e-26 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.009G006500 [exp] 111 / 1e-25 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.015G116700 [exp] 100 / 1e-22 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 89 / 5e-18 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 84 / 1e-16 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 81 / 8e-16 AT3G07620 572 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042357 [exp] 1276 / 0 AT3G57630 1187 / 0.0 exostosin family protein (.1.2) Lus10026311 [exp] 1202 / 0 AT3G57630 1108 / 0.0 exostosin family protein (.1.2) Lus10043326 [exp] 115 / 3e-27 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 113 / 1e-26 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043209 [exp] 112 / 5e-26 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 112 / 5e-26 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 108 / 9e-25 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 100 / 3e-22 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10013787 [exp] 79 / 8e-15 AT5G16890 673 / 0.0 Exostosin family protein (.1) Lus10039145 [exp] 78 / 9e-15 AT5G16890 679 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.006G054800.2 pacid=42768372 polypeptide=Potri.006G054800.2.p locus=Potri.006G054800 ID=Potri.006G054800.2.v4.1 annot-version=v4.1 ATGATTACAATTTCGAAATGGAAATGTTCATGGTCTTTGATGGCTACAATTGCATCTATAGTGGCATTAGTTTCGGTAGTTCATCTATTCTTGTTTCCCG TGGTGCCTTCTTTTGATCCCTTCAGTGTTTGGCAAGTTCAGGATTCTTGTGGCCCAAATAATGAATCAGTGGATGGAAGGACTGGTCATGACCCGGGAAA TTTACAGCCAGTTTTAGATTTAGAGCACAAGTTTCCAGCTGACTTGCACCGGGCAGTGTTTTATCGTAATGCACCATGGAAGGCTGAGATTGGACGATGG CTTTCTGGCTGTGATGCAGTTACTAAGGAAGTCAGTGTTGTTGAGACAATAAGTGGCAGGAGCTGCAAAAATGACTGTAGTGGTCAAGGAGTTTGTAACT ATGAACTTGGTCAATGTCGGTGTTTTCATGGATTTAGTGGGGAAGGATGCTCTGAGAGACTACACTTGGAATGTAACTACCCTAAATCACCAGAGCTACC ATATGGGCGATGGGTTGTCTCCATTTGCTCTGCTCATTGTGACCCAACGAGAGCAATGTGCTTTTGTGGAGAAGGTACAAAATATCCAAATCGTCCTGCA GCAGAGACTTGTGGGTTTCAACTGAGCTTACCTTCTGAACTTGGTGCCCCGAGACAAGTTGATTGGGCAAAACCTGACCTGGACATATACACAACAAACA AAAGCAAACTAGGATGGTGTAATGTGGACCCAGCTGAAGGGTATGCCAACAAGGTGAAATTCAAAGAGGAATGCGACTGCAAATATGATTGTTTGTCAGG GCGGTTCTGTGAAGTGCCTGTGCAATGCTCTTGTATTAACCAATGCTCTGGACATGGGCATTGCCGTGGTGGTTTTTGTCAGTGTGCCAATGGTTGGTAT GGAACAGACTGCAGTATCCCATCTGTTACATCATCTGTAAGAGAGTGGCCTCGGTGGCTTCGACCTGCTCAGCTTGATGTTCCTGACAATGCACATCTCA CTGGGAAACTTGTTGATCTCAATGCAGTGGTCAAGAAGAAAAGGCCCCTTATATATATTTATGATTTACCCCCAAAGTTCAACAGTTTACTTCTTGAGGG GCGGCATTTTAAGTTCGAATGTGTAAACAGGCTGTATAATGATAACAATGCAACAATTTGGACGGATCAGTTGTATGGTGCCCAGATGGCACTCTATGAA AGTATTTTAGCTAGCCCATATCGAACATTAAATGGTGAAGAAGCTGACTTTTTCTTTGTACCTGTTCTTGATTCTTGCATCATTACACGTGCTGACGATG CACCTCACCTGAGTATGGAGCAACATTTGGGTTTGAGGAGCTCTCTCACTCTAGAATTTTATAGGAAGGCATACGATCACATTGTTGAGCATTATCCATT CTGGAACCGCTCATCAGGAAGAGACCATATATGGTCTTTTTCATGGGATGAAGGTGCTTGCTATGCCCCTAAGGAGATATGGAATAGCATGATGGTGGTT CACTGGGGTAATACAAATTCAAAGCATAACCATTCCACAACAGCCTATTGGGCTGACAACTGGGATAAAATTTCTTCTGATAGAAGAGGCAAGCATCCTT GCTTTGATCCTGATAAAGATCTTGTGCTTCCTGCCTGGAAGCGACCTGATGTCAATGCTCTGAGCACCAAACTGTGGGCTAGGCCTCTTGAAAAGCGGAA GACATTATTCTATTTCAATGGAAATCTTGGACCAGCATACCTGAATGGAAGACCAGAAGCTTTGTATAGCATGGGTATCAGACAGAAACTTGCAGAGGAG TTTGGATCAACCCCTAACAAGGATGGTAATCTTGGGAAACAACATGCTGAAAATGTGATTGTGAGCCCATTGCGCTCTGAAAGCTACCATGAGGATTTAG CCAGTTCTGTTTTCTGTGGAGTAATGCCTGGAGATGGTTGGAGTGGTCGTATGGAAGATAGCATTTTGCAAGGGTGCATTCCAGTTGTCATTCAGGATGG GATATACCTGCCATATGAAAATGTGCTCAACTATGAAAGCTTTGCTGTCAGAATTCTGGAAGACGAGATTCCAAATTTGATAAAGATCCTTCAGGGATTC AATGAGACAGAAATAGAAAACAAGTTGACCAGCGTCCAGAAAATCGGGCAGAGATTCTTGTATCGTGATTCTATGTTGCTTGAAGCTGAGAGACAAAAAA CTGCTTTTGGCTACGTGGAGGATTGGGCAGTTGAATTCTTACGATTGACAGAAGATGATGTCGTTGCCACCTTTGTACAGGTTCTACACTATAAGTTGCA CAATGACCCTTGGAGGCGGCAGCTTGGTTCTCAGAAGAAAGATTTTGGCTTGCCACAAGAATGTTTAATGAGAACATCCTGA
AA sequence Show only first row Show all	>Potri.006G054800.2 pacid=42768372 polypeptide=Potri.006G054800.2.p locus=Potri.006G054800 ID=Potri.006G054800.2.v4.1 annot-version=v4.1 MITISKWKCSWSLMATIASIVALVSVVHLFLFPVVPSFDPFSVWQVQDSCGPNNESVDGRTGHDPGNLQPVLDLEHKFPADLHRAVFYRNAPWKAEIGRW LSGCDAVTKEVSVVETISGRSCKNDCSGQGVCNYELGQCRCFHGFSGEGCSERLHLECNYPKSPELPYGRWVVSICSAHCDPTRAMCFCGEGTKYPNRPA AETCGFQLSLPSELGAPRQVDWAKPDLDIYTTNKSKLGWCNVDPAEGYANKVKFKEECDCKYDCLSGRFCEVPVQCSCINQCSGHGHCRGGFCQCANGWY GTDCSIPSVTSSVREWPRWLRPAQLDVPDNAHLTGKLVDLNAVVKKKRPLIYIYDLPPKFNSLLLEGRHFKFECVNRLYNDNNATIWTDQLYGAQMALYE SILASPYRTLNGEEADFFFVPVLDSCIITRADDAPHLSMEQHLGLRSSLTLEFYRKAYDHIVEHYPFWNRSSGRDHIWSFSWDEGACYAPKEIWNSMMVV HWGNTNSKHNHSTTAYWADNWDKISSDRRGKHPCFDPDKDLVLPAWKRPDVNALSTKLWARPLEKRKTLFYFNGNLGPAYLNGRPEALYSMGIRQKLAEE FGSTPNKDGNLGKQHAENVIVSPLRSESYHEDLASSVFCGVMPGDGWSGRMEDSILQGCIPVVIQDGIYLPYENVLNYESFAVRILEDEIPNLIKILQGF NETEIENKLTSVQKIGQRFLYRDSMLLEAERQKTAFGYVEDWAVEFLRLTEDDVVATFVQVLHYKLHNDPWRRQLGSQKKDFGLPQECLMRTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57630			exostosin family protein (.1.2...		Potri.006G054800 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Potri.016G125000 [exp]	1.73	0.8321
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.014G095500 [exp]	2.82	0.8206
AT5G05340			Peroxidase superfamily protein...		Potri.016G132900 [exp]	4.24	0.8277	Pt-PRX1.14
AT3G48880			RNI-like superfamily protein (...		Potri.001G373900 [exp]	4.47	0.8305
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.004G042600 [exp]	4.58	0.7951
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Potri.005G139800 [exp]	5.09	0.7816
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Potri.010G225200 [exp]	5.91	0.7323
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	6.70	0.7721
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.002G028500 [exp]	13.67	0.7834
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	22.27	0.7383

Compare expression of checked genes

Potri.006G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.