Plant FIBer expression Database

Potri.006G055100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G052901
[exp]
93 / 5e-24 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G055100.1 pacid=42769041 polypeptide=Potri.006G055100.1.p locus=Potri.006G055100 ID=Potri.006G055100.1.v4.1 annot-version=v4.1
ATGATAAGCCAGCGCGGTAGAGGCAGGCCACCTAAGAGTTCATACAAGAACCCTAATCTCCAGCCTCCGGTCAATAACCTCCACTCTACGGCTGGTTTTT
TCCCGCAACATATACCAAGGAAATCAAGGACCGTAACCAAAACAAATATTGCGGTGAAAACATGGCCTCGTTGGGGTTCTGACGATTCAGCGGAAACACA
GCCGTTGTGGGTTGTGGAAAAGGAGAGTAACATGCCACAAAGGATTGCAAAAAAGAAGAGCACATATCCAAAATCAAACGAGGAATCCGGTCCGTGTTCA
TCGTTGTCGGAGTCTTCGTTGGTTCCATGGATGACAGATATTGTGATTCCAGGACCAATTCCGGACTTCGATTCGTTTAACGAAGCTGGTTTCTTAAAGG
ATTTTTTTGTGGGCATACCAGAAGATTAA
AA sequence
>Potri.006G055100.1 pacid=42769041 polypeptide=Potri.006G055100.1.p locus=Potri.006G055100 ID=Potri.006G055100.1.v4.1 annot-version=v4.1
MISQRGRGRPPKSSYKNPNLQPPVNNLHSTAGFFPQHIPRKSRTVTKTNIAVKTWPRWGSDDSAETQPLWVVEKESNMPQRIAKKKSTYPKSNEESGPCS
SLSESSLVPWMTDIVIPGPIPDFDSFNEAGFLKDFFVGIPED

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G055100
[exp]
0 1
AT1G26800 RING/U-box superfamily protein... Potri.010G168300
[exp]
6.48 0.8962
AT1G15140 FAD/NAD(P)-binding oxidoreduct... Potri.008G126700
[exp]
19.07 0.8677
AT5G28460 Pentatricopeptide repeat (PPR)... Potri.014G090400
[exp]
20.04 0.8648
AT2G20880 AP2_ERF AtERF53 ERF domain 53, Integrase-type ... Potri.019G102200
[exp]
28.98 0.8544
AT1G18260 HRD3A, EBS5 EMS-mutagenized bri1 suppresso... Potri.015G038100
[exp]
30.57 0.8444
AT2G18670 RING/U-box superfamily protein... Potri.006G175700
[exp]
38.27 0.7177
AT1G74310 HOT1, ATHSP101 heat shock protein 101 (.1) Potri.015G056900
[exp]
40.29 0.8520 Pt-ATHSP101.1
AT5G41990 EIP1, ATWNK8, W... EMF1-Interacting Protein 1, wi... Potri.008G037200
[exp]
42.10 0.8492
AT2G46240 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASS... Potri.002G166300
[exp]
43.17 0.8498
AT4G30480 TPR1, AtTPR1 tetratricopeptide repeat 1, Te... Potri.018G100700
[exp]
47.27 0.7900

Potri.006G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.