Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57660 1890 / 0 NRPA1 nuclear RNA polymerase A1 (.1) AT5G60040 414 / 2e-120 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 344 / 6e-96 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT1G63020 105 / 2e-22 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) ATCG00180 103 / 6e-22 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) AT2G40030 96 / 2e-19 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) ATCG00170 71 / 1e-11 ATCG00170.1, RPOC2 DNA-directed RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341900 [exp] 415 / 1e-120 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 328 / 6e-91 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.001G111300 [exp] 125 / 2e-28 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.003G196900 [exp] 112 / 2e-24 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 100 / 1e-20 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.013G140850 [exp] 96 / 8e-20 ATCG00180 1181 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028000 [exp] 89 / 9e-19 ATCG00180 516 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.013G140260 [exp] 71 / 7e-12 ATCG00170 2104 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028101 [exp] 44 / 0.0004 ATCG00170 516 / 5e-174 DNA-directed RNA polymerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011299 [exp] 2044 / 0 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10040493 [exp] 2043 / 0 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10015971 [exp] 415 / 6e-121 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10041856 [exp] 327 / 2e-90 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10013536 [exp] 200 / 2e-51 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10028403 [exp] 166 / 8e-41 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10006339 [exp] 108 / 4e-23 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002955 [exp] 107 / 6e-23 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002748 [exp] 96 / 2e-19 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10000051 [exp] 80 / 5e-17 AT5G60040 224 / 5e-69 nuclear RNA polymerase C1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00623 [poplar] [flax] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF04983 [poplar] [flax] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04998 [poplar] [flax] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF05000 [poplar] [flax] RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4
Representative CDS sequence Show only first row Show all	>Potri.006G055300.1 pacid=42768806 polypeptide=Potri.006G055300.1.p locus=Potri.006G055300 ID=Potri.006G055300.1.v4.1 annot-version=v4.1 ATGGCTGCCCTAGAGGGTGCAACTGTGTCAGTTGATTCGGTAGCGTTTAGCTTCTTAACGGATGAAGAGGTTCATAAGCATAGTTTTGTAAAGATTACCA GCGCGAGATTGCTTGATACTTTGGACAAACCTGTGCCTGGTGGATTATATGACCCAGCAATGGGGCCTCTAGGGGATGAGCCTTGCAAAACATGCGGTCA ACGTTCAACTAATTGCACAGGTCATTGTGGCCATATAGATCTGATTAGTCCAGTTTACAATCCTCTGCTCTTTAATTTTCTTCACAAACTTCTGCAAAGA ACCTGTTTCTTCTGCTTTCATTTTAGAGCAGATAGCAACCAGGTTGAGAAATTTGTTTCTCAATTGGAACTCATCATAAAAGGTGATGTTGTTGGGGCTA AAAGGTTGGATTCTTTCTCGCCAATTGAAGCCTCATTGCCAGAAGACAGTGATGGCAGCAGTGAATCTTGTTCTACAATTCATTCAGGAGCACGGCATCC AAACAATGAGCAGTCAAAGCAGAGCGAATGGACCTCCCTTCAGTTATCTGAAGCAATGTCTATCTTAAATAATTTTCTGAAGTTGGAATCAAAGAAGTGC AAGAACTGTTCAGCATCAAATCCTAATATTCGGAAGCCTACTTTTGGTTGGTTTCATTGGGCAGGTTTATCAAATGCAGCTATTAGATCAAATCTGATTA AGCAGCAGACAATTGAAGGGCCATTTGGGGGTGCATTTGAAGAGTTGATAGATGCAGAAGATGCAACCAAATCTCCTAGTAACAAAGAGTCTGCCACAAA CAGGAATTTGAAAGAACACCAGAAATTGCAACATCAGTTCACTAGCCAGAAAGATGCTTTGTCCTCGCAGTTATTACCATCAGAAGCGATGGATATTTTA AAGCTTTTGTGGAAAAATGAAGCTCGACTCTGCTCATTGATGAGTGACATTCAGCAGCAAGGAGTAGGAAAGAAAAAGGCAGGACATTCTATGTTCTTTC TGAACACTGTTTTAGTGCCTCCAATCAAATTCAGGCCTCCGACCAAGGGAGGCGACTCTGTGATGGAACATCCTCTATCTGTTTTGCTGAGCAAGGTGCT GGAATTGAATGGATCTTTGGCAGATGCGCATAGAAGCAATGATTTCCCATTAATAGCTAGGCGGTGGTTGGAACTTCAGCAATCTCTAAATGTCTTGTTT GATTCCAATACTGCCAAGGGTCAGAAGGATGTGATTTCTGGGATATGCCAGATACTTGAGAAAAAGGAGGGTATGTTTCGGCAGAAAATGATGGGAAAGA GGGTTAATTATGCATGCCGGTCTGTTATTTCCCCAGATCCTTATTTAGATGTTAACGAAATTGGAATTCCTCCGTGCTTTGCAGTGAAGTTAACATATCC TGAGAGAGTGACACCCTGGAATGTTGCCAAATTGAGAAATGCTGTAATCAATGGTGCTGAAAGTCATCCTGGAGCTACACACTATGTGGATAAGCTGTCT ACTACTAAGCTTCCACTGAATCGAAAAATGCGTGTTTCTGTAGCAAGGAAATTATCCGGGAGGAGTGTTGATTATGAATATGAAGGGAAAATTGTATATC GCCATTTGCAAGATGGAGATATTGTGCTTGTCAATCGACAGCCTACACTTCACAAACCAAGTATAATGGCACATGTAGTTCGTGTATTGAAGGGGGAGAA GACACTACGCATGCACTATGCAAATTGCAGTACATACAATGCTGATTTTGATGGTGATGAAATGAATGTTCATTTCCCACAAGATGAAGTTTCTCGAGCT GAAGGTTACAACATTGTTAATGCAAATAATCAATATGTCAGGCCTTCCAATGGCGAACCAATTAGATCCTTGATTCAGGATCATATTATTAGTGCTGTGC TTTTAACAAAGAAGGACACTTTTTTGACTGAGGATGAAGTTTATCAACTGCTTTATAGTTCTGGCGTGTCAAATGCTCGTCCAACATCTTTCAGTGGCAA AGCTGGCCGGAAAGTTATATTCTTAAGTTATGAAGATGAGATTGAAACCGTTGATCCTGCAATAAGGAAACCCATTTATCTGTGGTCAGGAAAACAGTTG ATTACTGCTGTGTTGAATCACATTACAAGGGGCCATCCACCATTCACTGTTGAGAAAGGTGGGAAGCTCTCGTATGATTTTTTTAAGAGTAAAATTAAGA ATGGCAAATCTAGCAATGGAGAAAAAGTTGGTGTAAGCAAACCAATGAAGGAAAAAGAGTCTGGCAAAGTCAATCCAAAAGAAAATCAGCTTGAAGATGA TAAGATGATTATCTTTAGGAATGTATTGGTCCAAGGGGTGATTGACAAGGCCCAGTTTGGTGAGTATGGTTTGGTGCACACAGTTCAAGAATTGTTTGGT GCAAAAGCAGCTGGCACCCTGCTCTCTGTTTTCAGTCGTTTATTCACTGCTTATTTGCAGATGCATGGATTCACATGTGGAGTTGATGATCTTTTGATAA CGAAAATTAAAGACGACGAAAGGAAGAAGCAACTTGAAAACTGTGAAAAGTGTGGGGAACAAATTCATCGTAAATTTATCGGAATCAAGGATGAGAACAT TAAGATAGATCCATTGGAATTACAATCAAATATCGAGAAAACTATACGCAGTGATGGTGAGTCTGCCTTGACATATCTGGATAGGCAGATGACAAATGAA CTAAATTCCAAAACAAGCTCAGGAGTCATCAATGAGCTGTTGTCTGAAGGGTTGCTAAAACCCTCTGGAAAGAATTGCATATCACTTATGACTACATCTG GGGCTAAAGGTAGCAAGGTCAATTTCCAACAGATATCTTCTTTTCTAGGCCAACAGGAGTTGGAAGGTAAAAGAGTTCCTCGAATGGTTTCTGGAAAGAC ATTGCCCTGCTTTCATCCATGGGATTGGGCAGCCCGTGCTGGAGGCTATATTATTGATCGTTTTCTCACCGGTCTGCGTCCTCAAGAATATTATTTCCAT TGTATGGCTGGTCGTGAAGGGTTGGTTGATACAGCTGTCAAAACATCTCGCAGTGGATACCTCCAAAGATGCCTGATTAAAAATCTTGAGTGCCTCAGAA TCGGCTATGATCATACAGTTCGTGATGCTGATGGCTCAATTGTTCAATTTTACTATGGAGAAGATGGTGTGGATGTTCATCAAACGGGCTTTATTGCTAA ATTTGAAGCCTTGGCAGCGAATCGAGAAATAATATACGAAAAAAGTGATGAGCTTGGCACATGTAATGCTTATATTTCGGAATTGCCTAAAGCTCTTAAA GAAAAAGCAGAAACATTCCTACGTAAAATCGCAAAGGAGCAGAGTTCTTTACATGATCCCACAAAGGATCGGAGTTCTAATTTAGTGGAACATGATTTCT ATAAGTTACTGAAGCAAAAGTTTTTCACGAGTCTTGCACAACCAGGAGAACCAGTTGGTGTCCTTGCTGCTCAGTCTGTAGGAGAACCATCAACACAGAT GACGCTGAACACTTTCCATCTAGCCGGGCGTGGTGAAATGAATGTAACACTTGGAATTCCACGTCTCCAAGAGATTTTGATGACTGCTTCAGCTGATATC AAGACTCCGATTATGACCTGCCCCTTGCATGAAGGGAGAACTAAAGAGGATGCTGAGCGCCTTTCTGATAAGTTGAAGAAGGTCACCGTAGCCGATATAG TAGAGAGCATGGAAGTATCTGTCATGCCATTTGCTGTTCAGAATGACGACATTTGCAGAATTTATAAGCTTAAAATGAAGCTTTATACACCAGCGCACTA CCCACAACATGCTGATATATCAGTAGAAAATTGGGAAGAAACCCTTGAGGTGTTGTTTGTGAGAGAGTTGGAGGATGCTATACAAAATTATCTGGTTTTG CTTTCTAAAATTAGCGGCATTAAGAATTTTTTGAAGGAATCACATTCAGGGACGCCAATTGAAGCAGAAGAAGATGTTTCTGGCAACATATCACGCGAGG GTGAAAACGATGATGATAGTGATGATGAAGAAGGGGAAGAGGCTGATGATCTAGGTTTAGATGTGCAGAAAAGAAAACAGCAAGTTACAGATGAGATGGA TTATGATGATGGCTCTGAGGGGGTACTGAATGAAGATGAAGGGGATTTATCAGGAAGCCAGGCTCCATCTGGATCTGAAAGTGATACTGAACCGGCTGAT AAAGAAAGTGAGATCAGTAATACCGATATGGTTGACTATGACAGTGAATATTTTGAAAAGCCAACACATCTTGGAAATTACTCTAAGCCAAAGTCAAGGA AGAAAACCTCAGAAAGTTCATCACAAGTCGAAATGCATTCTAAGCTAAAGTCAACAGAAAAGAAGAAACAAAAGGCCAAGGGAAAGAAAGTTAGATCGAA ATTAGTTAAAAAGGACTTTGATAGATCAATCTTTGTGGAAGCCAAGGGATTGCACTTTGAAATCCATCTTAAATTCACCAATGAGCCTCATATTTTACTG GCCGAGATTGCTCAGAAGACAGCCAAGAAGGTCTGTATCCAGAATCCCGGGAAGGTTCAACGGTGTCAAGTGACTGATTGCAAAGAAAATCAAGTGATTT ACTATGGGAAAGACCCCAAGAGAAGAATTGATATTGAACCTGGGGAAAAACAAAAAATCCCAGCGCTTCATACAATTGGAGTGGACTTCAATACATTTTG GAAAATGCAAGATCACCTTGATGTTAGGTATATGTATTCAAATAGCATTCATGGTATGTTGAAAGCTTATGGAGTAGAGGCCGCAAGAGAGACAATCATT AGGGAGATAAAGCACGTGTTCAATTCTTATGGAATATCCGTTAATACACGGCATTTGTCTCTTATTGCTGATTATATGACCCATACCGGTGAGTACCGTC CGATGAGCCGTATTGGGGGCATATCAGAGTCGATATCACCTTTAAGTAAAATGTCTTTTGAGACAGCGTCCAAATTCATAGTTGAAGCAGCATTGCACGG GGAGGTCGATAATTTGGAAGCTCCATCTGCAAGGGTTTGTCTTGGATTGCCAGTGAAAATGGGTACTGGATCTTTTGATTTGATGCAGAAACTGGAAATT TGA
AA sequence Show only first row Show all	>Potri.006G055300.1 pacid=42768806 polypeptide=Potri.006G055300.1.p locus=Potri.006G055300 ID=Potri.006G055300.1.v4.1 annot-version=v4.1 MAALEGATVSVDSVAFSFLTDEEVHKHSFVKITSARLLDTLDKPVPGGLYDPAMGPLGDEPCKTCGQRSTNCTGHCGHIDLISPVYNPLLFNFLHKLLQR TCFFCFHFRADSNQVEKFVSQLELIIKGDVVGAKRLDSFSPIEASLPEDSDGSSESCSTIHSGARHPNNEQSKQSEWTSLQLSEAMSILNNFLKLESKKC KNCSASNPNIRKPTFGWFHWAGLSNAAIRSNLIKQQTIEGPFGGAFEELIDAEDATKSPSNKESATNRNLKEHQKLQHQFTSQKDALSSQLLPSEAMDIL KLLWKNEARLCSLMSDIQQQGVGKKKAGHSMFFLNTVLVPPIKFRPPTKGGDSVMEHPLSVLLSKVLELNGSLADAHRSNDFPLIARRWLELQQSLNVLF DSNTAKGQKDVISGICQILEKKEGMFRQKMMGKRVNYACRSVISPDPYLDVNEIGIPPCFAVKLTYPERVTPWNVAKLRNAVINGAESHPGATHYVDKLS TTKLPLNRKMRVSVARKLSGRSVDYEYEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA EGYNIVNANNQYVRPSNGEPIRSLIQDHIISAVLLTKKDTFLTEDEVYQLLYSSGVSNARPTSFSGKAGRKVIFLSYEDEIETVDPAIRKPIYLWSGKQL ITAVLNHITRGHPPFTVEKGGKLSYDFFKSKIKNGKSSNGEKVGVSKPMKEKESGKVNPKENQLEDDKMIIFRNVLVQGVIDKAQFGEYGLVHTVQELFG AKAAGTLLSVFSRLFTAYLQMHGFTCGVDDLLITKIKDDERKKQLENCEKCGEQIHRKFIGIKDENIKIDPLELQSNIEKTIRSDGESALTYLDRQMTNE LNSKTSSGVINELLSEGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYFH CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLRIGYDHTVRDADGSIVQFYYGEDGVDVHQTGFIAKFEALAANREIIYEKSDELGTCNAYISELPKALK EKAETFLRKIAKEQSSLHDPTKDRSSNLVEHDFYKLLKQKFFTSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADI KTPIMTCPLHEGRTKEDAERLSDKLKKVTVADIVESMEVSVMPFAVQNDDICRIYKLKMKLYTPAHYPQHADISVENWEETLEVLFVRELEDAIQNYLVL LSKISGIKNFLKESHSGTPIEAEEDVSGNISREGENDDDSDDEEGEEADDLGLDVQKRKQQVTDEMDYDDGSEGVLNEDEGDLSGSQAPSGSESDTEPAD KESEISNTDMVDYDSEYFEKPTHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKVRSKLVKKDFDRSIFVEAKGLHFEIHLKFTNEPHILL AEIAQKTAKKVCIQNPGKVQRCQVTDCKENQVIYYGKDPKRRIDIEPGEKQKIPALHTIGVDFNTFWKMQDHLDVRYMYSNSIHGMLKAYGVEAARETII REIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIGGISESISPLSKMSFETASKFIVEAALHGEVDNLEAPSARVCLGLPVKMGTGSFDLMQKLEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	0	1
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	1.00	0.9322
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	1.41	0.9259
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.003G060500 [exp]	2.82	0.8991
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	2.82	0.8904
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.010G208400 [exp]	3.16	0.8877
AT2G18900			Transducin/WD40 repeat-like su...		Potri.018G091100 [exp]	3.87	0.8785
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	4.24	0.8946
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	5.74	0.8859
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	6.00	0.8904
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	6.32	0.8956

Compare expression of checked genes

Potri.006G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.