Plant FIBer expression Database

Potri.006G056200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41905 37 / 5e-05 unknown protein
AT3G57690 34 / 0.0005 AGP23, ATAGP23 ARABINOGALACTAN-PROTEIN 23, arabinogalactan protein 23 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G052001
[exp]
47 / 7e-09 AT3G57690 / ARABINOGALACTAN-PROTEIN 23, arabinogalactan protein 23 (.1)
Potri.009G063600
[exp]
38 / 2e-05 AT2G41905 51 / 1e-10 unknown protein
Potri.001G268800
[exp]
36 / 0.0001 AT2G41905 40 / 2e-06 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G056200.1 pacid=42770104 polypeptide=Potri.006G056200.1.p locus=Potri.006G056200 ID=Potri.006G056200.1.v4.1 annot-version=v4.1
ATGGAATTGAAGAAGATCTCCTGCGCTGTCCTCGTCGTCGCTGCCTCCATGAGTGCAGCCTTGGCAGCTGATGAGATCTCAGCTCCTGCTCCCTCCCCTA
CCAGTGGAGCATCCGCAACCTTGCCTGTTGTTGGATCCTTGATTGGGGCTTCCCTTGTGTCATTCTTTGCCTATTATTTGCAGTAA
AA sequence
>Potri.006G056200.1 pacid=42770104 polypeptide=Potri.006G056200.1.p locus=Potri.006G056200 ID=Potri.006G056200.1.v4.1 annot-version=v4.1
MELKKISCAVLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYYLQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57690 AGP23, ATAGP23 ARABINOGALACTAN-PROTEIN 23, ar... Potri.006G056200
[exp]
0 1
AT1G17745 PGDH D-3-phosphoglycerate dehydroge... Potri.010G249600
[exp]
6.00 0.8677
AT3G21550 AtDMP2 Arabidopsis thaliana DUF679 do... Potri.008G115100
[exp]
6.32 0.8404
Potri.019G038310
[exp]
6.92 0.8512
AT1G04410 c-NAD-MDH1 cytosolic-NAD-dependent malate... Potri.002G141700
[exp]
7.07 0.8310
Potri.003G152500
[exp]
7.61 0.8545
AT5G19860 Protein of unknown function, D... Potri.003G217200
[exp]
8.48 0.8135
AT2G25355 PNAS-3 related (.1.2) Potri.015G075400
[exp]
11.22 0.7985
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Potri.011G120200
[exp]
11.22 0.8218
Potri.004G047866
[exp]
15.19 0.8024
AT1G60710 ATB2 NAD(P)-linked oxidoreductase s... Potri.014G147700
[exp]
21.49 0.7445 Pt-ATB2.1

Potri.006G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.