Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 473 / 2e-162 ATNEK5 NIMA-related kinase 5 (.1) AT3G44200 430 / 7e-139 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G12200 412 / 1e-136 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G04810 407 / 3e-134 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 402 / 1e-132 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 399 / 9e-132 ATNEK4 NIMA-related kinase 4 (.1.2) AT1G54510 395 / 2e-129 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT1G50240 145 / 6e-36 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G07980 139 / 8e-34 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT3G53930 135 / 4e-33 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051900 [exp] 1109 / 0 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.001G018700 [exp] 495 / 6e-169 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 489 / 1e-166 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 431 / 3e-139 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 430 / 7e-139 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 413 / 1e-136 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.005G051600 [exp] 407 / 3e-133 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 401 / 1e-131 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.019G052500 [exp] 141 / 2e-34 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011301 [exp] 621 / 0 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10040499 [exp] 600 / 0 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10031834 [exp] 428 / 2e-144 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10042632 [exp] 414 / 6e-137 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10001783 [exp] 406 / 4e-134 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10013338 [exp] 417 / 1e-133 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10020244 [exp] 405 / 1e-133 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 415 / 5e-133 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10015928 [exp] 379 / 6e-123 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 378 / 8e-123 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G056300.2 pacid=42769004 polypeptide=Potri.006G056300.2.p locus=Potri.006G056300 ID=Potri.006G056300.2.v4.1 annot-version=v4.1 ATGGAGGCAGATGCTGCTGAAGTGAAGTCAAAGATGGAAGATTATGAAGTTATTGAGCAGATTGGAAGAGGAGCTTTTGGTTCTGCTTTTCTTGTTCTTC ATAAAACTGAAAAAAAGAAGTATGTGTTGAAGAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTTAAGCGCACAGCTCATCAGGAGATGAACTTGATTGC GAAGCTAAATAACCCTTACATTGTGGAGTACAAGGATTCTTGGGTAGACAAGGGAAACTGTGTATGCATAGTAACAGGCTACTGTGAAGGAGGAGACATG GCTGCAATTATAAAGAAGGCCAGAGGAATATTTTTCCCAGAGGAGAAACTCTGCAAGTGGTTGGCTCAATTGTTGCTAGCTGTGGACTACTTGCATTCTA ACCGTGTCCTTCACAGAGATCTAAAGTGTTCCAACATATTCCTTACAAAGGAAAATGACATTCGCCTTGGTGACTTTGGACTTGCAAAGCTTCTCAACAC AGAAGACCTTGCTTCTTCGGTAGTTGGCTCCCCTAATTACATGTGTCCCGAGCTCCTAGCAGATATACCTTATGGCTACAAATCAGATATATGGTCACTT GGATGCTGTATGTTCGAAATTGCAGCACATCAACCAGCATTTAGAGCTCCTGATATGGCTGGACTTATCAACAAAATAAACAGATCCTGCATTTCTCCTC TTCCAATTGTGTATTCCTCCTCGCTGAAACAAATTATTAAGAGCATGCTGAGGAAGAACCCAGAACACAGACCAACAGCTGCAGAATTATTGAGGCATCC ACATTTGCAACCACATCTCCTCCGTTGCCGCAATGCATCTTCAGTTTTTCTTCCAGTATATCCCATAAACAACTCAAAGGAGAAAACCAGAAGAAAATCA TTGCCTGCCAAACTCAGTGTTGGCAAAGACAACAGAGACAAGGACGTTGGTGCATCAAAGCAGCCAGAATACGAATATCCATTTGAGAGAAATGTTGAAG CACAACGAAGCAATTTACCTCAGAATGACAAGCCAACATCAATGTCTAGCACAGAATACAGCCTGGAAAACAAGACAGTTGATCCTACAAGCTGTTCAGT GGAAGTATCTGACGGTCCTAAAGACAGCTCCACTGATTCTGAAACAAGTGTTTGCAATGGAGAGAAGCAAGCAGATTGTAGCAGTCCACCTCAAAAGGAT GGCACTGAAATTGAGTCTACCTCAGAGAGCATCCCAAATTCTCAGCATGAAGCAGATTGTAGCAGTCCACCTCAAAAGGATGGCACTGAAATTGAGTCTA CCTCAGAGAGCATCCCTAATTCTCAGCATGAAGAAGAAGAACCCAGTGCTCTGCGTTTTCAAGATTTGCAAGAGGTTGATGTCAAAATTGTGACCTCAAA GGATCAAGCAACATTTTGCAGCGGACAATTTCCTGAAGAAGTTCAAACAGAGGGGAAGGGTGATACAGTAGATGAAACCAGGAAACTGGAAATGCCTAGT CTGAGTTGTGCCAATCATGATGCCGCCTCTGATGATAAAAGCCCACCATCAACTGTAAATGAACCTTATGCAGAGGCCTTACAGAAACCAGAAAGTCCTG ATGTATACACAGAAAGTACTCATATAGAGTACTTGTCATCTGAAAGTAATGATGTACTTCCATGTAAAGATGAAATACAAGCAAAACCAGAAAACAACAA TTGCTCCATGGACACAGAGAAAGATGATATCCATGCGATGACTAATGCACAATTGCTGAGCACACTTGCTGCACTAACAGGCGATGAATCCAAGAGCGAG TGGGAGAATCCAAGTCAACAAAGAGCTGATGCTCTAGAGTCTTTGCTAGAGCTATGTGCACGGCTACTTAAACAGGAAAAGATCGATGAGCTTGCTGGTG TGCTAAAGCCATTTGGAGAAGAAATGGTCTCATCCAGAGAAACAGCAATCTGGTTGACAAAAAGCCTCATGTCTCAGCAAAAACTCAATGAAGGGACCTG A
AA sequence Show only first row Show all	>Potri.006G056300.2 pacid=42769004 polypeptide=Potri.006G056300.2.p locus=Potri.006G056300 ID=Potri.006G056300.2.v4.1 annot-version=v4.1 MEADAAEVKSKMEDYEVIEQIGRGAFGSAFLVLHKTEKKKYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDSWVDKGNCVCIVTGYCEGGDM AAIIKKARGIFFPEEKLCKWLAQLLLAVDYLHSNRVLHRDLKCSNIFLTKENDIRLGDFGLAKLLNTEDLASSVVGSPNYMCPELLADIPYGYKSDIWSL GCCMFEIAAHQPAFRAPDMAGLINKINRSCISPLPIVYSSSLKQIIKSMLRKNPEHRPTAAELLRHPHLQPHLLRCRNASSVFLPVYPINNSKEKTRRKS LPAKLSVGKDNRDKDVGASKQPEYEYPFERNVEAQRSNLPQNDKPTSMSSTEYSLENKTVDPTSCSVEVSDGPKDSSTDSETSVCNGEKQADCSSPPQKD GTEIESTSESIPNSQHEADCSSPPQKDGTEIESTSESIPNSQHEEEEPSALRFQDLQEVDVKIVTSKDQATFCSGQFPEEVQTEGKGDTVDETRKLEMPS LSCANHDAASDDKSPPSTVNEPYAEALQKPESPDVYTESTHIEYLSSESNDVLPCKDEIQAKPENNNCSMDTEKDDIHAMTNAQLLSTLAALTGDESKSE WENPSQQRADALESLLELCARLLKQEKIDELAGVLKPFGEEMVSSRETAIWLTKSLMSQQKLNEGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.006G056300 [exp]	0	1
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	3.00	0.9376
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	3.31	0.9452
AT3G01810			unknown protein		Potri.001G333200 [exp]	4.47	0.9367
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	4.69	0.9397
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	6.32	0.9367
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	7.74	0.9214
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	8.36	0.9096	Pt-KT2.2
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.007G047000 [exp]	9.16	0.9286
AT1G22060			unknown protein		Potri.006G120400 [exp]	10.81	0.9220
AT5G42710			unknown protein		Potri.014G185300 [exp]	10.95	0.9087

Compare expression of checked genes

Potri.006G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.