Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATJ6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 336 / 3e-116 ATJ6, EMB1393 J-domain protein 6 (.1) AT2G21510 76 / 2e-15 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G48030 76 / 4e-15 GFA2 gametophytic factor 2 (.1) AT4G39150 75 / 4e-15 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT3G62600 73 / 2e-14 ATERDJ3B DNAJ heat shock family protein (.1) AT1G77020 72 / 6e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G68370 69 / 4e-13 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 69 / 5e-13 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G21080 69 / 8e-13 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051800 [exp] 487 / 1e-175 AT3G12170 353 / 2e-123 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 73 / 2e-14 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 72 / 4e-14 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.004G158300 [exp] 71 / 8e-14 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.002G074600 [exp] 71 / 8e-14 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G013200 [exp] 71 / 1e-13 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.009G065500 [exp] 71 / 1e-13 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 70 / 2e-13 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G119800 [exp] 69 / 3e-13 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026315 [exp] 388 / 2e-136 AT3G12170 355 / 3e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10013402 [exp] 386 / 9e-136 AT3G12170 361 / 2e-126 Chaperone DnaJ-domain superfamily protein (.1) Lus10042353 [exp] 386 / 1e-135 AT3G12170 356 / 1e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10010323 [exp] 369 / 6e-129 AT3G12170 363 / 4e-127 Chaperone DnaJ-domain superfamily protein (.1) Lus10035855 [exp] 78 / 7e-16 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 77 / 1e-15 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 76 / 2e-15 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 76 / 3e-15 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10022297 [exp] 72 / 4e-14 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 71 / 1e-13 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.006G056400.1 pacid=42767062 polypeptide=Potri.006G056400.1.p locus=Potri.006G056400 ID=Potri.006G056400.1.v4.1 annot-version=v4.1 ATGGGAAGGAAAGGGAAGAAAACTAGGGTTTCTCGTCAGGAAGAAGAAGAAATTGAATCCGAAGTGGATGAAGAGATGGAATCCGAAGTAGAAGAAGAGG AACAGCAAGAACATATGACTCAATCCTCTGCAAACGAGAAGAGTCTCTACGAGGTTCTTGGTGTTGAGAAGGCAGCATCTCAGCAGGAAATAAAGAAAGC GTACTATAAGTTGGCCTTGAGACTCCATCCTGATAAAAATCCTGGTGATGAGGATGCCAAGGAGAAATTTCAGCTATTGCAAAAGGTGATATCAATTCTT GGTGATGAGGAAAAAAGGGCAGTCTATGATCAGACTGGCTGTGTTGATGATGCTGATCTTGCAGGGGATGTTGTTCAGAATTTGAAGGATTTTTTCAGAA ATTTTTACAAAAAGGTCACTGAAGCTGATATTGAAGAGTTTGAAGCAAATTATAGAGGATCTGATTCAGAGAAGAAGGATTTGATTGACCTCTATAAGGA GTGGCAGGGTAACATGAGCAGGCTCTTCTGCTCAATGCTTTGCTCTGATCCTAAGCTCGATTCACACCGATTCAAGGACATTCTGGATGAGGCAATATCT GCAGGGGAAGTGAAGAGAACCAAAGCTTACCAGAAATGGGCAAAACGAATATCTGAAACAAAACCGCCCACCAACCCTTTAAAAAGGAGGGAGAAGTCCA AAAAGGAGCCAGAAGCAGATCTATTTGCAATCATATCTGAGCGCCAGAGTAAGAGGAAGAACCAGGTGACTTCCTTTCTCTCGTCCCTGGAGTCCAAATA TGGCGGGAGCAATGCAAGTTCAGAACCTACTGAAGAAGAATTTGAAGCAATACAGAAGAAAATGGAAAGCCGCCGTAAGGGCTCCAAGAAGTCGAATCAA AAGTAA
AA sequence Show only first row Show all	>Potri.006G056400.1 pacid=42767062 polypeptide=Potri.006G056400.1.p locus=Potri.006G056400 ID=Potri.006G056400.1.v4.1 annot-version=v4.1 MGRKGKKTRVSRQEEEEIESEVDEEMESEVEEEEQQEHMTQSSANEKSLYEVLGVEKAASQQEIKKAYYKLALRLHPDKNPGDEDAKEKFQLLQKVISIL GDEEKRAVYDQTGCVDDADLAGDVVQNLKDFFRNFYKKVTEADIEEFEANYRGSDSEKKDLIDLYKEWQGNMSRLFCSMLCSDPKLDSHRFKDILDEAIS AGEVKRTKAYQKWAKRISETKPPTNPLKRREKSKKEPEADLFAIISERQSKRKNQVTSFLSSLESKYGGSNASSEPTEEEFEAIQKKMESRRKGSKKSNQ K

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.006G056400 [exp]	0	1	Pt-ATJ6.1
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.002G208251 [exp]	1.73	0.9196
AT4G10630			Glutaredoxin family protein (....		Potri.001G448300 [exp]	3.46	0.9147
AT1G78790			unknown protein		Potri.012G090600 [exp]	4.00	0.8954
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	5.29	0.9127
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	8.36	0.9093
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	10.48	0.9150	Pt-RGP3.4
AT4G15790			unknown protein		Potri.008G207500 [exp]	10.81	0.9071
AT2G24970			unknown protein		Potri.018G016300 [exp]	11.48	0.8552
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	11.48	0.9088
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	13.41	0.9046

Compare expression of checked genes

Potri.006G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.