Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06940 887 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G28650 393 / 1e-121 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G49660 388 / 3e-120 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 383 / 5e-118 HSL1 HAESA-like 1 (.1) AT5G65710 380 / 6e-117 HSL2 HAESA-like 2 (.1) AT4G28490 379 / 1e-116 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 374 / 9e-115 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 370 / 2e-113 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 363 / 4e-110 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G09970 358 / 8e-109 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051600 [exp] 1388 / 0 AT5G06940 978 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 419 / 3e-131 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G049100 [exp] 397 / 2e-123 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 392 / 2e-121 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.019G021700 [exp] 392 / 4e-121 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 386 / 5e-119 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G111700 [exp] 381 / 3e-117 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G078400 [exp] 378 / 2e-116 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 377 / 6e-116 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040500 [exp] 1069 / 0 AT5G06940 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011302 [exp] 1045 / 0 AT5G06940 984 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10025943 [exp] 393 / 6e-122 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000814 [exp] 390 / 1e-120 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 388 / 8e-120 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039872 [exp] 369 / 7e-115 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10017267 [exp] 373 / 2e-114 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011576 [exp] 368 / 1e-113 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 368 / 3e-112 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10018636 [exp] 367 / 3e-112 AT1G28440 1203 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G056600.1 pacid=42767928 polypeptide=Potri.006G056600.1.p locus=Potri.006G056600 ID=Potri.006G056600.1.v4.1 annot-version=v4.1 ATGGCCACCACCTGCACATGCACTTTTGTTCTCTGCCTTAGCCTCACATTCTTCATGTTTAGTTCAGCTTCTTCAACTGAAGCAGATGTCCTCCTTTCTT TCAAAGGCTCCATTCAAGACCCCAAGAACACTCTTTCAAGCTGGTCCAGCAACTCAACTGTCCATTACTGTAACTGGACTGGAATCACCTGCACTACTTC ACCTCCACTCACTCTAACTTCTCTCAACCTTCAAAGTTTGAATCTTTCTGGTGAAATCTCTTCTTCAATTTGTGAGCTAACCAATTTGGCTCTTCTCAAT CTTGCTGACAATTTTTTTAACCAGCCTATACCTTTACACCTTTCTCAGTGTAGTTCTTTGGAGAGTTTGAATCTTAGTAACAATCTCATTTGGGGTCCTA TCCCAGATCAGATTTCCCAGTTTCATTCTTTGAGAGTTTTTGATCTTAGCAAGAACCATATTGAGGGAAGGATTCCAGAAAGCTTTGGCTTATTGGAGAA GTTGCAAGTACTCAACTTGGGAAGCAACTTGCTTTCAGGTAGTGTTCCTTCTGTATTTGTGAATCTCACTGAGCTTGTTGTTCTTGATCTGTCTCAGAAT GTGTACTTGATGAGTGATGTTCCTAGTGAGATTGGGAAACTTGGGAAGCTTGAGCAGCTTTTGTTGCAAAGTTCTGGTTTTTATGGTCAAATTCCTGATT CTTTTGTGGGTTTGCAAAGTTTAACCATTTTGGACCTCTCACAGAACAATCTAAGTGGTATGATTCCTCAAACACTAGTGTCTTCTCTTAAGAACTTAGT GTCTTTTGATGTTTCTCAAAACAAGCTTTCAGGGTCATTTCCAAATGATATATGCAGTGCACCAGGCCTTAAAAACCTTGGTCTCCACACTAATTTCTTC AATGGTTCGATACCAAACTCCATTGGTGAATGCTCTAATCTTGAGAGGTTTCAAGTTCAAAACAACGAGTTTTCTGGTGATTTCCCAGCTGGGTTGTTGT CACTAAGCAAAATAAAGCTCGTTAGAGCTGAAAATAACAGATTTTCTGGTGCAATACCAGATTCAATGTCAATGGCAACTCAATTGGAGCAAGTACAGAT AGATAACAACAGCTTCACAGGAAAAATCCCCCATGCTCTTGGTTTGGTTAAGAGCTTGTATAGATTCTCTGCATCTCTTAATGGTCTCTATGGTGAATTA CCTCCAAATTTTTGTGATTCTCCTGTTATGAGTATCATAAACCTATCCCACAATTCTCTTTCTGGCCAAATTCCAAAGATGAAAAAGTGCAGGAAACTGG TCTCCTTGTCTTTGGCAGACAATAGTCTTAGTGGGGAAATCCCTCCATCCCTTGCCGATTTACCAGTGCTGACTTACCTTGATCTTTCTAATAACAATCT CACTGGTTCAATCCCTCAAGGGCTTCAAAATTTGAAGCTTGCACTCTTCAATGTATCCTTTAATCAACTATCCGGAGAAGTCCCTCCTGATCTAGTCTCT GGACTCCCTGCTTCATTCTTGGAAGGAAATCCTGGCCTTTGTGGCCCAGGATTGCCCAATTCTTGTTCGGTTGATCTGCCAAGACATCATAATCCTGTTG GTCTTAGTGCATTAGCATGTGCCCTTTTATCTATAGCATTTGGCTTGGGAATTTTGCTTGTTGCTGCTGGGTTTTTCGTGTTCCATCGATCCACTAAATG GAAATCTGAAATGGGTGGTTGGCATTCGGTGTTTTTCTACCCTCTCAGAGTCACAGAGCATGATTTAGTCGTTGGGATGGATGAGAAAAGTGCTGTTGGA AGTGGTGGAGCTTTTGGTAGAGTGTACATTATAAGTTTACCAAGTGGTGAACTGGTTGCTGTAAAAAAGCTAGTCAATATCGGGAACCAATCTTCAAAAG CATTAAAGGCTGAGGTCAAGACATTAGCCAAGATCAGGCATAAGAACATCATTAAAGTTCTTGGATTTTGTCATTCAGAGGAATCAATCTTTCTAATCTA TGAGTACTTGCAAAAGGGGAGCTTAGGGGATTTAATTAGCAGAGCAGACTTTCTGTTGCAATGGAGTGATAGGTTGAAGATTGCCATTGGGGTTGCTCAA GGATTGGCATACCTTCACAAACATTATGTCCCACATTTACTTCACAGAAATGTTAAGTCCACGAATATCCTTCTGGATGCGGATTTTGAACCAAAGCTCA CGGATTTTGCTCTCGACCGAATTGTGGGAGAAGCTGCATTTCAAACAACAATTGCTTCAGAATCTGCATACTCTTGCTACAATGCTCCTGAATGTGGATA CACGAAGAAAGCAACCGAGCAAATGGATGTTTACAGCTTTGGTGTGGTGCTACTAGAGCTGATAGCAGGCCGACAAGCTGATCAAGCAGAATCAGTTGAC ATTGTGAAGTGGGTGCGAAGGAAAATCAACATCGCTAATGGAGCAGTCCAAGTTCTCGACTCTAAGATATCAAACTCTTCCCAACAAGAGATGCTAGCAG CCCTAGATATTGCCATCTATTGCACTTCTGTGCTACCGGAGAAACGACCATCAATGCTTGAAGTCACTAGAGCTCTCCAGTCTCTAGGCTCAAAAACTCA CCTTTCAGATTCGTACTTGTCCACTCCTGAGGAGAACTCTGTTCCAGTATAA
AA sequence Show only first row Show all	>Potri.006G056600.1 pacid=42767928 polypeptide=Potri.006G056600.1.p locus=Potri.006G056600 ID=Potri.006G056600.1.v4.1 annot-version=v4.1 MATTCTCTFVLCLSLTFFMFSSASSTEADVLLSFKGSIQDPKNTLSSWSSNSTVHYCNWTGITCTTSPPLTLTSLNLQSLNLSGEISSSICELTNLALLN LADNFFNQPIPLHLSQCSSLESLNLSNNLIWGPIPDQISQFHSLRVFDLSKNHIEGRIPESFGLLEKLQVLNLGSNLLSGSVPSVFVNLTELVVLDLSQN VYLMSDVPSEIGKLGKLEQLLLQSSGFYGQIPDSFVGLQSLTILDLSQNNLSGMIPQTLVSSLKNLVSFDVSQNKLSGSFPNDICSAPGLKNLGLHTNFF NGSIPNSIGECSNLERFQVQNNEFSGDFPAGLLSLSKIKLVRAENNRFSGAIPDSMSMATQLEQVQIDNNSFTGKIPHALGLVKSLYRFSASLNGLYGEL PPNFCDSPVMSIINLSHNSLSGQIPKMKKCRKLVSLSLADNSLSGEIPPSLADLPVLTYLDLSNNNLTGSIPQGLQNLKLALFNVSFNQLSGEVPPDLVS GLPASFLEGNPGLCGPGLPNSCSVDLPRHHNPVGLSALACALLSIAFGLGILLVAAGFFVFHRSTKWKSEMGGWHSVFFYPLRVTEHDLVVGMDEKSAVG SGGAFGRVYIISLPSGELVAVKKLVNIGNQSSKALKAEVKTLAKIRHKNIIKVLGFCHSEESIFLIYEYLQKGSLGDLISRADFLLQWSDRLKIAIGVAQ GLAYLHKHYVPHLLHRNVKSTNILLDADFEPKLTDFALDRIVGEAAFQTTIASESAYSCYNAPECGYTKKATEQMDVYSFGVVLLELIAGRQADQAESVD IVKWVRRKINIANGAVQVLDSKISNSSQQEMLAALDIAIYCTSVLPEKRPSMLEVTRALQSLGSKTHLSDSYLSTPEENSVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	0	1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	2.23	0.9498
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	2.82	0.9480
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	3.46	0.9462
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	4.89	0.9463
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	6.00	0.9283
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	6.48	0.9309	PtrAUX8
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	7.74	0.9256	CYP51.2
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	8.36	0.9303
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	8.66	0.9388
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.005G253900 [exp]	9.16	0.9118

Compare expression of checked genes

Potri.006G056600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.