Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42320 618 / 0 nucleolar protein gar2-related (.1.2) AT3G57780 593 / 0 unknown protein AT5G06930 482 / 8e-160 unknown protein AT3G01810 443 / 1e-142 unknown protein AT5G43230 401 / 2e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051500 [exp] 1169 / 0 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.010G057700 [exp] 473 / 5e-155 AT5G43230 560 / 0.0 unknown protein Potri.008G177500 [exp] 474 / 6e-153 AT5G43230 565 / 0.0 unknown protein Potri.001G333200 [exp] 463 / 6e-149 AT3G01810 652 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040502 [exp] 827 / 0 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10011304 [exp] 818 / 0 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10037001 [exp] 453 / 6e-145 AT3G01810 583 / 0.0 unknown protein Lus10041590 [exp] 438 / 1e-139 AT3G01810 603 / 0.0 unknown protein Lus10022341 [exp] 434 / 6e-138 AT3G01810 605 / 0.0 unknown protein Lus10015804 [exp] 286 / 2e-89 AT5G43230 371 / 2e-122 unknown protein Lus10015805 [exp] 100 / 1e-21 AT3G01810 160 / 5e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G056800.2 pacid=42769643 polypeptide=Potri.006G056750.1.p locus=Potri.006G056800 ID=Potri.006G056800.2.v4.1 annot-version=v4.1 ATGAAAGAGACTGACATGAGAAGAACTCCCAATACTAATCAGTCGAAGCGCTCGGGAAAAACTGAAAGGAGAGACCGTAAACCGAATCAAGCATCGAATA TAAAGGGAGTTGAATCTAAAGCTCTGTTTCTTGCTAAACCAGACTCCTCCAGTGCTGTTTTAGTAAGTGATTCGAACACGGGCTCAGAGCCCCCTGAAGT TTATGAAAACTTGGTTATACATTACGTGGATGATGCCAATAGGTCTGAGGAGGCTCCTCGAGATTCAAAAGTCAATCCCATGATTGCCAAAGCCAGCAAG GATGAGGCTTTAGATGACCATTCTGATGAATTAGGTAGGGAAGCTAATCAGGGGAAGGAAGGGGAGTGGGATTCTGAGACAATAAAAGATTCAGTTTCAT CTCAAGGTGACTCAGTGATAGCTGAGGATGAGAAAGTAGAAAATGTTTCGAGAGTCCCGAAATCAGTTTCCAATAAGAATTCATCAGAAAGTGGTCCTCG CGGATCAAGGGTGAGATCTGATCGTGACAATGGTAAATCTAGGTCTAAAGCAGTAAATAACACTACCAAAAAACCTGCCAAAACAAATAAAGGGCTGTCA AAAGTTACTTCGAAAAGTTCTTTTGATAAAAATTCTAAAGACATGACAGTTCCTCCGAAACCTTCTCCAGAATCTTCCGAAGGAGCTGATGATAAGTCTG CGGAAGATGTAAGAGAAATAGATGTTTTAGATGAGGCCTCGAATGGTACTCAGAGTGTTGCAAGTGACAATGAAACAGCTGATGCTGAAGAAAATGGTGA ACATGAGGATGAAGCAGAATTAATTCAAAAGATTGAAGACATGGAAATGAGAATTGGGAAACTTGAAGCAGAGCTAAGAGAAGTTGCTGCTCTTGAAATA TCAATATATTCTGTAGTACCAGAACATGGGAACTCAGCACATAAGGTGCACACACCTGCACGACGCCTTTCTAGACTCTACATTCATGCTTGCAAGCAAT GGACCCAAGATAAGCGAGCTACGATCGCCAGAAACACTGTTTCAGGACTTGCATTGATTTCCAAGTCCTGTGGTAATGATGTTCCAAGGTTAACATTTTG GTTGTCCAACACAATTGTGCTGAGAGAGATCATTTCCCAGGCATTTGGAAGTTCACGGAACTCAAGTCCCCTTGCAAGGCATGCGGGGTCCAATGGGGGT AGCAAGAAAAGTGAAGGAAAGTCTACAGCAGTGAAATGGAAGAGTGGTTCTGGTAGTAAACAAGTTAATGGTTTTATGCAGTTTGCTGACGATTGGCAGG AGACGGGAACCTTTACAGCTGCATTAGAAAAAGTTGAATCGTGGATATTTTCCCGTATAGTCGAATCTGTATGGTGGCAGGCTTTGACTCCACATATGCA ATCTCCTGCTGCGGATTTGCCCTCTAATAAAACCTCTGGAAGGTTGCTTGGACCAGCCTTGGGTGATCAGCAGCAAGGCAGCTTTTCTATCAACTTATGG AAGAATGCTTTCAAGGATGCTCTCCAACGACTTTGTCCTGTTAGAGCAGGAGGTCATGAGTGCGGTTGCTTGCCCATCATTGCAAGAATGGTGATGGAAC AGTGTGTTGCCAGACTAGATGTGGCAATGTTCAATGCTATTCTACGTGAGTCTTCCCATGAGATTCCAACTGACCCTATTTCAGATCCTATCGTAGATTC CAAGATTCTGCCAATTCCTGCTGGAGACTTAAGCTTTGGTTCTGGGGCACAACTCAAAAATTCTGTTGGTGATTGGTCTAGGTGGCTTACTGATATGTTT GGCATAGATGCTGATGATTCCCTGAAAGAAGATCAGCACGACAGTGAGGGTGATGACAGGCGATATGGTGAAACTAAATCCTTCCTTCTTCTTAATGACT TGAGTGATCTTCTGATGCTTCCAAAAGACATGCTTATGGACCGATCAATCCGGAAGGAGGTATGCCCATCAATTGGTCTTCCGTTAGTTAAGCGGATACT CTGCAACTTTACTCCTGATGAGTTCTGGCCAGATCCCGTCTCTGGAGCTGTATTAGAAGCATTGAACGCTGAGAGTATCGTGGAGCGGAGATTGTTAGGA GATGCTGCAAGAAATTTCCCTTATACAGCTGCTCCAGTTGTGTACACTCTACCTTCCTCATCTGATGTTGCAGTGGCCGGAACCAAGTCTCAGTTGTCAA GGAATGCATCTTCTGTACAAAGGAAAGGATACACCAGTGACGAAGAACTGGAGGAATTAGATTCTCCTCTTACCACTATAATTGAAAAATTGCCATCATC TCCAACTATCATGGCCAATGGAAATGGAAATGGAAAGCACAAGGAACATGCAGGGGATTTAGTAGCAAATGCAAGGTATGAACTCCTTCGTGAGGTCTGG TCTGCATGA
AA sequence Show only first row Show all	>Potri.006G056800.2 pacid=42769643 polypeptide=Potri.006G056750.1.p locus=Potri.006G056800 ID=Potri.006G056800.2.v4.1 annot-version=v4.1 MKETDMRRTPNTNQSKRSGKTERRDRKPNQASNIKGVESKALFLAKPDSSSAVLVSDSNTGSEPPEVYENLVIHYVDDANRSEEAPRDSKVNPMIAKASK DEALDDHSDELGREANQGKEGEWDSETIKDSVSSQGDSVIAEDEKVENVSRVPKSVSNKNSSESGPRGSRVRSDRDNGKSRSKAVNNTTKKPAKTNKGLS KVTSKSSFDKNSKDMTVPPKPSPESSEGADDKSAEDVREIDVLDEASNGTQSVASDNETADAEENGEHEDEAELIQKIEDMEMRIGKLEAELREVAALEI SIYSVVPEHGNSAHKVHTPARRLSRLYIHACKQWTQDKRATIARNTVSGLALISKSCGNDVPRLTFWLSNTIVLREIISQAFGSSRNSSPLARHAGSNGG SKKSEGKSTAVKWKSGSGSKQVNGFMQFADDWQETGTFTAALEKVESWIFSRIVESVWWQALTPHMQSPAADLPSNKTSGRLLGPALGDQQQGSFSINLW KNAFKDALQRLCPVRAGGHECGCLPIIARMVMEQCVARLDVAMFNAILRESSHEIPTDPISDPIVDSKILPIPAGDLSFGSGAQLKNSVGDWSRWLTDMF GIDADDSLKEDQHDSEGDDRRYGETKSFLLLNDLSDLLMLPKDMLMDRSIRKEVCPSIGLPLVKRILCNFTPDEFWPDPVSGAVLEALNAESIVERRLLG DAARNFPYTAAPVVYTLPSSSDVAVAGTKSQLSRNASSVQRKGYTSDEELEELDSPLTTIIEKLPSSPTIMANGNGNGKHKEHAGDLVANARYELLREVW SA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42320			nucleolar protein gar2-related...		Potri.006G056800 [exp]	0	1
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.006G155800 [exp]	4.58	0.8535
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	8.48	0.8986
AT4G16650			O-fucosyltransferase family pr...		Potri.001G157400 [exp]	10.24	0.8334
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	10.95	0.8536
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.002G021800 [exp]	14.69	0.8602
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	15.87	0.8685
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.014G039100 [exp]	18.16	0.8333
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	21.21	0.8516
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	24.71	0.8088
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	25.03	0.8345

Compare expression of checked genes

Potri.006G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.