Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57800 280 / 3e-92 bHLH bHLH060 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G42300 255 / 5e-83 bHLH bHLH048 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G26260 153 / 1e-43 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT4G34530 150 / 3e-42 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT3G07340 152 / 4e-42 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 149 / 1e-41 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 150 / 3e-41 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G10120 145 / 3e-40 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 146 / 1e-39 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 138 / 1e-38 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051100 [exp] 509 / 0 AT3G57800 305 / 8e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G156000 [exp] 158 / 1e-44 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 154 / 6e-43 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.005G121850 [exp] 151 / 3e-42 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.002G248500 [exp] 152 / 2e-41 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 150 / 1e-40 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.015G068100 [exp] 143 / 3e-40 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 148 / 6e-40 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G040000 [exp] 140 / 1e-39 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011307 [exp] 337 / 3e-114 AT3G57800 291 / 3e-96 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10042349 [exp] 322 / 2e-108 AT3G57800 260 / 3e-83 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10040506 [exp] 312 / 8e-105 AT3G57800 275 / 3e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10029110 [exp] 152 / 1e-41 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 152 / 1e-41 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10040448 [exp] 147 / 1e-41 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10023562 [exp] 147 / 2e-41 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10003172 [exp] 146 / 4e-41 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002337 [exp] 144 / 2e-39 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030807 [exp] 140 / 2e-39 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G057200.2 pacid=42769720 polypeptide=Potri.006G057200.2.p locus=Potri.006G057200 ID=Potri.006G057200.2.v4.1 annot-version=v4.1 ATGGATCTTACGACCGCATCCGGAGCTAGATCCGGACCCGAGCTTGACGAAACCGGACTGGATTCCTTCCAACTCGGTGAAGATATCCGTCACTTAATCA CTGCGCCATCAGAAAACGCGAGTTCTTTCATTGCTTTACTAGAATTACCAGCTAACCAAGCCGTGGAGTTGCTTCATTCGGACTCGGGTCAAAAACAGTA CCCGAACTTGACTTTTCCCTCAAACACTTCCGCCATATTCTCCGTTTTTAATGGCGGTAGTAATTCAACGGATTCCAGCCCCGTTCCGTCAAACTCGAGC TCGAAGGATGTCGAGAAAGCATCAGCCGTTAAGTGTGAGCCATTAGAGACGGGGTCTTACCTTGATTCATCTCATCCGTTGGTCTCTGATCCAACCGTGG ATAATTCGGCGCCAAATGCAAGGCCGTCCTCGAAGAGAAAGGAACGAGAGAAGAAGGTTAAAGCAGCATCAAAGAAGAGCAAAACTGAGAGTTCTCAACA AGAAGAAGACATGCTGCCTTACGTTCATGTTCGAGCTCGGCGGGGACAAGCAACAGATAGCCATAGCTTAGCAGAAAGAGCGAGGAGAGAGAAGATTAAT CAAAGAATGAAGTTATTACAAGAACTGGTCCCAGGCTGCAATAAGATTTCTGGTACAGCATTGGTTTTGGATGAAATTATCAACCATGTGCAGTCCCTGC AATGTCAAGTGGAGTTCTTATCAATGAGACTTGCAGCAGTTAACCCAAGAATTGATTTCAATCTCGACAGCATGTTGGCTGCAGAAAGTGGATCTCTAAT TGACAGTAACTTCCCCGGCATGGTAATGCCTCTGATGTGGCCAGAAGCCGAAGTCAATGGAAACAGACACCAGTTCCAACAGCACTGGCAGTTTGATGCG CTTCACCAGCCAATTTGGGGAAGAGAAGAAGACAGCCATAACTTCATTACTCCCGAGAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGCATCTC TGCACTCCAATCAATTGAAAATGGAAGGCAGAATGAAGCTCCACCAGTAG
AA sequence Show only first row Show all	>Potri.006G057200.2 pacid=42769720 polypeptide=Potri.006G057200.2.p locus=Potri.006G057200 ID=Potri.006G057200.2.v4.1 annot-version=v4.1 MDLTTASGARSGPELDETGLDSFQLGEDIRHLITAPSENASSFIALLELPANQAVELLHSDSGQKQYPNLTFPSNTSAIFSVFNGGSNSTDSSPVPSNSS SKDVEKASAVKCEPLETGSYLDSSHPLVSDPTVDNSAPNARPSSKRKEREKKVKAASKKSKTESSQQEEDMLPYVHVRARRGQATDSHSLAERARREKIN QRMKLLQELVPGCNKISGTALVLDEIINHVQSLQCQVEFLSMRLAAVNPRIDFNLDSMLAAESGSLIDSNFPGMVMPLMWPEAEVNGNRHQFQQHWQFDA LHQPIWGREEDSHNFITPENSLLSYDSSANSASLHSNQLKMEGRMKLHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	0	1
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	1.73	0.9205	Pt-PHOT1.1
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	3.74	0.9138	ATML1.2
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	4.58	0.8916
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	4.58	0.9121
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	5.65	0.8992
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.017G060100 [exp]	10.09	0.8239
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	10.81	0.8789
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	11.22	0.8577
AT4G31980			unknown protein		Potri.017G145100 [exp]	11.40	0.8163
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	12.32	0.8336

Compare expression of checked genes

Potri.006G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.