Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12180 108 / 4e-31 Cornichon family protein (.1) AT1G12390 78 / 6e-19 Cornichon family protein (.1) AT4G12090 72 / 7e-17 Cornichon family protein (.1) AT1G12340 70 / 4e-16 Cornichon family protein (.1) AT1G62880 66 / 3e-14 Cornichon family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051000 [exp] 231 / 2e-79 AT3G12180 142 / 4e-44 Cornichon family protein (.1) Potri.001G116100 [exp] 82 / 1e-20 AT1G12390 184 / 3e-61 Cornichon family protein (.1) Potri.003G116400 [exp] 77 / 9e-19 AT1G12390 182 / 2e-60 Cornichon family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028906 [exp] 77 / 2e-18 AT1G12390 207 / 2e-70 Cornichon family protein (.1) Lus10009295 [exp] 69 / 1e-15 AT1G12390 142 / 7e-45 Cornichon family protein (.1) Lus10004320 [exp] 69 / 1e-14 AT1G12390 173 / 1e-55 Cornichon family protein (.1) Lus10007000 [exp] 67 / 2e-14 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10006997 [exp] 67 / 2e-14 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10015866 [exp] 64 / 9e-14 AT1G12390 128 / 1e-39 Cornichon family protein (.1) Lus10000384 [exp] 64 / 3e-13 AT1G12390 161 / 5e-52 Cornichon family protein (.1) Lus10030270 [exp] 43 / 4e-06 AT1G12390 94 / 2e-26 Cornichon family protein (.1) Lus10004023 [exp] 0 / 1 AT1G12340 101 / 5e-30 Cornichon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03311 [poplar] [flax] Cornichon Cornichon protein
Representative CDS sequence Show only first row Show all	>Potri.006G057300.9 pacid=42770321 polypeptide=Potri.006G057300.9.p locus=Potri.006G057300 ID=Potri.006G057300.9.v4.1 annot-version=v4.1 ATGATTTTGAATTTGATTTTCTGGATCCTCTGTTTACTCATCAACTTCGGCCTCCTCGCCATCGTCTTCTACGCGCTTTTATGCTTAACGGACTTGGAGG TTGACCAAATGGATCCGTTCGTGGCGACGGCTAACATCAACAGGTGGATACTGCCTGAGTTTGTTTTGCAAGCTGTACTCAGCCTTCTTTTGCTCTTGAC AGGCCACTGGATCTTGTTTTTGTTGGCAGTTCCTCTTACCTGCTATCATGCTATTCTGTTTATTAGACGGCAACATCTTATTGATGTCACTGAAGTTTTC CGAAATCTCAACACTGACAAGAAGCGTAGGATGATCAAGCTTGGCGTATACATGATCTTCTTCACAATTTTTATATTTAGAATTGGTGCAGGCATTTTAG CACTATTCAACTCTGAAGAATTAGATATCCGCTCATCTTTTTTTGAGTTCTAG
AA sequence Show only first row Show all	>Potri.006G057300.9 pacid=42770321 polypeptide=Potri.006G057300.9.p locus=Potri.006G057300 ID=Potri.006G057300.9.v4.1 annot-version=v4.1 MILNLIFWILCLLINFGLLAIVFYALLCLTDLEVDQMDPFVATANINRWILPEFVLQAVLSLLLLLTGHWILFLLAVPLTCYHAILFIRRQHLIDVTEVF RNLNTDKKRRMIKLGVYMIFFTIFIFRIGAGILALFNSEELDIRSSFFEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12180			Cornichon family protein (.1)		Potri.006G057300 [exp]	0	1
AT4G10130			DNAJ heat shock N-terminal dom...		Potri.014G032000 [exp]	3.00	0.7244
					Potri.019G016120 [exp]	3.16	0.7561
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	7.00	0.6945	SAD1.1
					Potri.017G037400 [exp]	7.21	0.7199
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.012G123550 [exp]	14.42	0.6492
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	17.14	0.6456
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.007G068400 [exp]	18.73	0.6773
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Potri.015G029300 [exp]	18.97	0.5827
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Potri.008G188600 [exp]	25.03	0.6368
AT5G14680			Adenine nucleotide alpha hydro...		Potri.017G071700 [exp]	32.49	0.7040

Compare expression of checked genes

Potri.006G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.