Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57830 708 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 661 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 446 / 3e-148 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 385 / 9e-125 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 365 / 7e-117 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 330 / 7e-104 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 265 / 3e-79 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 262 / 3e-78 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 258 / 4e-77 Leucine-rich repeat protein kinase family protein (.1.2) AT2G36570 239 / 1e-69 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050800 [exp] 1023 / 0 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 454 / 4e-151 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 452 / 1e-149 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 370 / 2e-118 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 362 / 1e-115 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 360 / 3e-115 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 356 / 2e-113 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 270 / 6e-81 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G131500 [exp] 256 / 2e-76 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021022 [exp] 649 / 0 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 393 / 1e-132 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) Lus10023831 [exp] 384 / 2e-127 AT3G57830 431 / 8e-146 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 345 / 3e-109 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 333 / 9e-105 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 293 / 1e-89 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 288 / 6e-88 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 285 / 4e-86 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 280 / 2e-84 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 259 / 9e-77 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G057500.1 pacid=42768446 polypeptide=Potri.006G057500.1.p locus=Potri.006G057500 ID=Potri.006G057500.1.v4.1 annot-version=v4.1 ATGAAAATGTCACTAATCCCTTTCAAAGTCACAGCCTTTCTCGTTACAATCACCTTCACCAACCTTCGATTTCTCTCCTTGTCTCTTAACACTGATGGTC TAGCTCTCCTAGCCCTCAAAGCCGCAATCACAACTGATCCAACCGACACTCTAGCTTCCTGGACCGAAACTGACCCAACCCCGTGTCACTGGCATGGTAT CACTTGCATTAACCACAGAGTCACCTCTCTTTCGCTCCCTAACAAAAACCTCATTGGCTACATTCCTTCTGAACTTGGCCTTCTCGACTCACTAACTCGA CTCACTCTCTCTCGCAACAACTTCTCTAAACTCATACCTTTACACCTCTTCAATGCATCAACTCTCCGCTTTCTTGATTTGTCTCACAATTCTCTGTCAG GTCCAATTCCTGCCAAGATTGAATCTTTGCAAGCCTTAACCCACTTGGATTTATCTTCTAATTGTCTTAACGGGTCTCTCCCTGCATCTTTGATTAAGCT AAAAAGCTTAACTGGGACTTTAAATTTGTCTTACAATTCGTTTTCTGGGGAGATTCCAGGGTCTTATGGGTTTTTTCCTGTAATGTTGGGTTTAGATTTA AGACACAATAATCTTAGTGGCAAAGTGCCTTTAGTTGGGTCATTAGTGAACCAGGGGCCAACTGCATTTGCTGGAAACCCAAGTCTTTGTGGTTTTCCTT TACAAACTCCATGTCCTGAAGCTGTTAATATCACGATTAGTGATAATCCTGAGAACCCAAAAGGCCCAAATCCTGTTTTTATCCCTGGGAGTGTTGAGAA CGTGAAAATCAAAACAGAGTCGATAGCAGTTCCCTTAATTTCGGGCGTTTCGGTGGTGATCGGTGTTGTTTCGGTATCAGCGTGGCTGTATCGAAAGAAA TGGTGGGCTAATGAGGGTAAAGTGGGAAAAGAAAAGATAGACAAGAGTGACAATAATGAGGTTACTTTTAAAGAGGAGGGGCAGGATGGTAAATTTCTGG TGATCGATGAAGGGTTTAATTTGGAATTAGAGGATTTGTTGAGGGCATCTGCTTCTGTGGTGGGGAAAAGTAGGACTGGGATAGTGTACAAGGTGGTCGT GGGTGGTCGTGGGTCTGGTACGGTGGTGCCTATGGTTGTTGCTGTGAGGAGGCTGAGTGAAGATGATGCCACGTGGAAGCTGAAGGAATTTGAGTCCGAG GTTGAAGCAATTGGGAGGGTCCATCATCCTAATATTGCAAGGCTGAGAGCTTATTACTATGCGCATGATGAGAAGTTGTTGGTCTCTGATTTTATCCGCA ATGGAAGTTTATACTCTGCCCTGCATGGAGGACCTTCTAATACTTTGCCTGTGCTATCATGGGCGGCTAGGTTGAAAATTGCTCAAGGAACGGCTAGGGG TTTAATGTACATACATGAGCACAGTCCTCGGAAGCATGTCCATGGCAACTTAAAATCCACAAAAATTCTGCTGGACGATGAACTCCAGCCTTACATCTCC AGTTTTGGGCTTGCTCGTCTTGTATCGAGTGGCTCAAAATTCACTACTTCAGCATCAAAAAAGCTGTATTTGAACCAAACCATTTCCTCTGCAACGGGCT TGAAAATTTCAGCTCCCTATAACGTTTACTTGGCACCAGAAGCTCGAGTCTCTGGCCGCAAGTTCACTCAGAAATGTGATGTGTACTCTTTTGGAATTGT ACTGATGGAGCTTTTAACTGGTCGGTTACCAGATGCAAGACCAGAAAATGATGGTAAGGGACTAGATAGCCTTGTGAGGAACATGTTTCGAGAGGAGCGC CCCTTGTCTGAGATTATAGACCCTGCACTATTAAGTGAGGTTCACGCAGAGAGACATGTTGTTGCAGTGTTTCATATCGCACTCAATTGCACTGAACTGG ATCCTGAATTGCGTCCTAGGATGAGAACTGTGTCTGAGAATCTTGACTGCATCAAATTGCATTGA
AA sequence Show only first row Show all	>Potri.006G057500.1 pacid=42768446 polypeptide=Potri.006G057500.1.p locus=Potri.006G057500 ID=Potri.006G057500.1.v4.1 annot-version=v4.1 MKMSLIPFKVTAFLVTITFTNLRFLSLSLNTDGLALLALKAAITTDPTDTLASWTETDPTPCHWHGITCINHRVTSLSLPNKNLIGYIPSELGLLDSLTR LTLSRNNFSKLIPLHLFNASTLRFLDLSHNSLSGPIPAKIESLQALTHLDLSSNCLNGSLPASLIKLKSLTGTLNLSYNSFSGEIPGSYGFFPVMLGLDL RHNNLSGKVPLVGSLVNQGPTAFAGNPSLCGFPLQTPCPEAVNITISDNPENPKGPNPVFIPGSVENVKIKTESIAVPLISGVSVVIGVVSVSAWLYRKK WWANEGKVGKEKIDKSDNNEVTFKEEGQDGKFLVIDEGFNLELEDLLRASASVVGKSRTGIVYKVVVGGRGSGTVVPMVVAVRRLSEDDATWKLKEFESE VEAIGRVHHPNIARLRAYYYAHDEKLLVSDFIRNGSLYSALHGGPSNTLPVLSWAARLKIAQGTARGLMYIHEHSPRKHVHGNLKSTKILLDDELQPYIS SFGLARLVSSGSKFTTSASKKLYLNQTISSATGLKISAPYNVYLAPEARVSGRKFTQKCDVYSFGIVLMELLTGRLPDARPENDGKGLDSLVRNMFREER PLSEIIDPALLSEVHAERHVVAVFHIALNCTELDPELRPRMRTVSENLDCIKLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	0	1
AT1G60420			DC1 domain-containing protein ...		Potri.008G175600 [exp]	1.73	0.8329
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Potri.013G028100 [exp]	4.12	0.8710
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	7.34	0.7953
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	8.12	0.8567
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	8.83	0.8266
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	8.94	0.8179
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	20.44	0.7943
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.003G053000 [exp]	24.65	0.8322
AT1G02550			Plant invertase/pectin methyle...		Potri.014G119200 [exp]	24.91	0.7047
AT5G66800			unknown protein		Potri.007G042600 [exp]	25.88	0.8116

Compare expression of checked genes

Potri.006G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.