Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 387 / 1e-138 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 348 / 2e-123 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G65270 318 / 3e-111 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 308 / 3e-107 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G07410 275 / 2e-94 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G09630 274 / 3e-94 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G16920 273 / 9e-94 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G06400 271 / 6e-93 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT2G33870 265 / 1e-90 ArRABA1h RAB GTPase homolog A1H (.1) AT5G60860 263 / 7e-90 AtRABA1f RAB GTPase homolog A1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050400 [exp] 424 / 2e-153 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.001G270100 [exp] 350 / 7e-124 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 333 / 3e-117 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 331 / 1e-116 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.006G000300 [exp] 280 / 2e-96 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 276 / 6e-95 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.008G061300 [exp] 271 / 5e-93 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 271 / 9e-93 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.014G102200 [exp] 270 / 5e-92 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016284 [exp] 369 / 1e-131 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 362 / 7e-129 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 367 / 1e-125 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 360 / 2e-125 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10035924 [exp] 323 / 4e-113 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 322 / 7e-113 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 322 / 1e-112 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 320 / 4e-112 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10002725 [exp] 315 / 4e-110 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10014732 [exp] 313 / 3e-109 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.006G057700.1 pacid=42770716 polypeptide=Potri.006G057700.1.p locus=Potri.006G057700 ID=Potri.006G057700.1.v4.1 annot-version=v4.1 ATGTCGAATTATGTAGATTACAATCAAAAGATTGATTATGTTTTCAAAATTGTGCTAATTGGAGATTCAGCAGTTGGAAAATCACAGTTTCTTGCAAGGT TCGCAAGAAATGAATTCAATGCGGATTCTAAAGCCACCATTGGGGTTGAATTCCAGACAAAAACGCTTGCTATGGATAACAAGACGGTCAAAGCACAGAT TTGGGACACTGCTGGCCAAGAAAGGTACAGGGCAGTGACGAGTGCATACTACAGGGGAGCAGTTGGTGCGATGTTAGTTTACGACATGACCAAGCGTCAG TCATTCGATCACTTGGCCAGATGGCTGGAGGAACTGAGGGGTCATGCTGATAAGAGCATTATCATCATGCTCATTGGCAACAAGTGTGACCTGGGAAGTC TTCGAGCAGTTCCAACAGAAGATGCAGAGGAGTTTGCTCAGAGAGAGAATCTCTTCTTTATGGAGACATCAGCACTGGAGGCCACCAATGTTGAAACTGC CTTTTGGACAGTGCTGACAGAAATATATAGGATAATCAGCAAGAAAACTCTTGCTGGCAATGATAAGTCGGATGGAAATCCAGGTGTCTTCAAGGGAACT AGGATTTTGGTTCCTTCACAAGCGCAGAATTCTGAAAAGAAGGGTTGTTGCATGTAA
AA sequence Show only first row Show all	>Potri.006G057700.1 pacid=42770716 polypeptide=Potri.006G057700.1.p locus=Potri.006G057700 ID=Potri.006G057700.1.v4.1 annot-version=v4.1 MSNYVDYNQKIDYVFKIVLIGDSAVGKSQFLARFARNEFNADSKATIGVEFQTKTLAMDNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ SFDHLARWLEELRGHADKSIIIMLIGNKCDLGSLRAVPTEDAEEFAQRENLFFMETSALEATNVETAFWTVLTEIYRIISKKTLAGNDKSDGNPGVFKGT RILVPSQAQNSEKKGCCM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G057700 [exp]	0	1
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G245500 [exp]	11.31	0.4683
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Potri.003G194100 [exp]	48.20	0.4254	ATCHX1.2
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.001G333400 [exp]	136.96	0.3903

Compare expression of checked genes

Potri.006G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.